Job Description P00935 Confidence 99.91% Date Wed Jan 25 15:20:10 GMT 2012 Rank 158 Aligned Residues 302 % Identity 14% Template c3f6tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution Resolution 2.15 Å

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		55	.	.	.	.	60	.	.	.	.												.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Query Sequence		D	V	V	Q	R	A	L	A	E	L	.	.	.	.	.	.	.	.	.	.	.	E	G	G	A	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	.	.	.	.	.	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	C	Y	R
Query Conservation												.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.																						.	.
Template Conservation																																																																								.	.
Template Sequence		V	N	T	E	K	I	I	N	Y	F	L	Q	E	L	S	Y	K	D	A	N	L	A	E	Q	T	D	L	F	P	T	E	G	G	T	A	A	I	V	Y	A	F	H	S	L	A	E	N	H	L	L	K	K	G	D	K	I	A	I	N	E	P	I	F	T	P	Y	L	R	I	P	.	.	E	L	K	D	Y	E	L	V
Template Known Secondary structure																	T	T	T				G	G	G																							T	T	S	S		T	T							S	S							T	S	G	.	.	G	G	G	G	S
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.
		119	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.																														.	.	.													.																	.	.
Query SS confidence									.	.	.	.	.	.	.																														.	.	.													.																	.	.
Query Sequence		V	L	F	V	D	Q	G	.	.	.	.	.	.	.	D	E	Q	A	L	R	A	A	L	A	E	K	P	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	V	.	.	.	D	I	A	K	I	C	H	L	A	R	E	V	.	G	A	V	S	V	V	D	N	T	F	L	S	P	A	L	Q	.	.	N	P	L
Query Conservation									.	.	.	.	.	.	.																														.	.	.													.																	.	.
Alig confidence									.	.	.	.	.	.	.																														.	.	.													.																	.	.
Template Conservation
Template Sequence		E	V	D	L	H	S	Y	E	K	N	D	W	E	I	E	P	N	E	I	E	K	L	K	D	P	S	I	K	A	L	I	V	V	N	P	T	N	P	T	S	K	E	F	D	T	N	A	L	N	A	I	K	Q	A	V	E	K	N	P	K	L	X	I	I	S	D	E	V	Y	G	A	F	V	P	N	F	K	S	I	Y
Template Known Secondary structure									T	T	T	T	S											S		T	T								S	S		T	T	T		B																		T	T								T	T	G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.																																					.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	G	A	D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	W	W	A	N	N	I
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	V	P	Y	N	T	X	L	V	Y	S	Y	S	L	F	G	C	T	G	W	R	L	G	V	I	A	L	N	E	K	N	V	F	D	D	N	I	A	H	L	D	K	V	E	L	R	Q	L	H	K	R	Y	S	S	V	V	L	D	P	D	K	X	K	F	I	D	R	L	C	A	D	S	R	S	I	G	L	Y	H
Template Known Secondary structure				S	G	G	G											S		G	G	G									S	S									T	S														T	T		S		G	G	G												T	T	T	T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		G	V	T	G	G	A	F	D	S	Y	L	L	L	R	G	L	R	T	L	V	P	R	M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y	L	Q	T	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																												.	.	.	.	.															.	.	.
Template Conservation																																																												.	.	.	.	.
Template Sequence		T	A	G	L	S	T	P	Q	Q	I	X	E	A	L	F	S	X	T	H	L	L	T	S	T	N	G	G	S	D	D	P	Y	I	D	I	A	R	K	L	V	S	E	R	Y	D	Q	L	H	D	A	X	Q	A	P	K	D	E	T	.	.	.	.	.	D	T	N	T	H	Y	Y	S	L	I	D	I	Y	R	L	A	E
Template Known Secondary structure		G		S																		T	T		B	G	G	G	T	B																							T						S	.	.	.	.	.	T	T	B			S
Template Predicted Secondary structure																																																												.	.	.	.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.						.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
															307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M	T	H	A	G	M	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	I	E	D	G	E	D	L	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	Y	G	K	E	F	R	D	Y	L	T	N	N	F	E	Q	V	D	F	L	L	K	L	A	E	K	N	G	V	V	L	V	D	G	V	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	K	P	G	E	L	R	V	S	Q	A	N	L	P	T	E	D	Y	A
Template Known Secondary structure																													T	T	S	S	S		T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	T	T						S	S	S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.																							.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		374	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	L	E	N	G	F	R	A	A	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	G	K	Q	V	L	E	L	L	K	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions