Phyre 2 alignment of P00935 with c3ez1A

Job Description P00935
Confidence 99.93% Date Wed Jan 25 15:20:10 GMT 2012

Rank 119 Aligned Residues 307

% Identity 16% Template c3ez1A_

PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase mocr family; PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	56	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.														.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure													.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	V	Q	R	A	L	A	E	L	E	G	G	.	.	A	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	F	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	C	Y	R	V	L
Query Conservation													.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	A	R	A	L	F	A	G	Y	L	D	V	K	A	E	N	V	L	V	W	N	N	S	S	L	E	L	Q	G	L	V	L	T	F	A	L	L	H	G	V	R	G	S	T	G	P	W	L	S	Q	T	P	K	X	I	V	T	V	P	G	Y	D	R	H	F	L	L	L	Q	T	L	G	F	E	L	L	T	V	D	X
Template Known Secondary structure										T	T	S		G	G	G					S	S																T			T	T		S	S		G	G	G	G									S													T
Template Predicted Secondary structure
Template SS confidence
	73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.

	121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140				.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																							.	.	.	.																												.	.	.	.
Query SS confidence																					.	.	.																							.	.	.	.																												.	.	.	.
Query Sequence	F	V	D	Q	G	D	E	Q	A	L	R	A	A	L	A	E	K	P	K	L	.	.	.	V	L	V	E	S	P	S	N	P	L	L	R	V	V	D	I	A	K	I	C	H	L	.	.	.	.	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	S	P	A	L	Q	N	P	L	A	L	G	A	.	.	.	.
Query Conservation																					.	.	.																							.	.	.	.																												.	.	.	.
Alig confidence																					.	.	.																							.	.	.	.																												.	.	.	.
Template Conservation
Template Sequence	Q	S	D	G	P	D	V	D	A	V	E	R	L	A	G	T	D	P	S	V	K	G	I	L	F	V	P	T	Y	S	N	P	G	G	E	T	I	S	L	E	K	A	R	R	L	A	G	L	Q	A	A	A	P	D	F	T	I	F	A	D	D	A	Y	R	V	H	H	L	V	E	E	D	R	A	E	P	V	N	F	V
Template Known Secondary structure		T	T													S		T	T								S	S	S		T	T	T														T				S	S	T	T								T	T	S	S		B			S	S	S
Template Predicted Secondary structure
Template SS confidence
	153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

										190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L	L	L	R	G	L	R	T	L	V	P	R	M	E	L	A	Q	R	N	A	Q
Query Conservation	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																		.
Template Sequence	V	L	A	R	D	A	G	Y	P	D	R	A	F	V	F	A	S	T	S	K	I	T	F	A	G	A	G	L	G	F	V	A	S	.	S	E	D	N	I	R	W	L	S	K	Y	L	G	A	Q	S	I	G	P	N	K	V	E	Q	A	R	H	V	K	F	L	T	E	Y	P	G	G	L	E	G	L	X	R	D	H	A
Template Known Secondary structure							T		T	T	S							S	T	T	T	S		S	S	S	S							.															S		S																	S	T	T
Template Predicted Secondary structure																																		.
Template SS confidence
	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

	261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence	A	I	V	K	Y	L	Q	T	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M
Query Conservation
Alig confidence					.	.																											.	.														.	.																														.	.
Template Conservation					.	.																											.	.														.	.																														.	.
Template Sequence	A	I	I	A	.	.	P	K	F	R	A	V	D	E	V	L	R	A	E	L	G	E	G	G	E	Y	A	T	W	T	L	P	.	.	K	G	G	Y	F	I	S	L	D	T	A	E	P	.	.	V	A	D	R	V	V	K	L	A	E	A	A	G	V	S	L	T	P	A	G	A	T	Y	P	A	G	Q	D	P	.	.
Template Known Secondary structure					.	.															T	T	T	T	S	S							.	.	S	B	S	S							S	S	S	.	.												T	T						T	T	T	T	S	S	T	T			S	.	.
Template Predicted Secondary structure					.	.																											.	.														.	.																														.	.
Template SS confidence
	312	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

	341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.								.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.
Query Sequence	T	H	A	G	M	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	I	E	D	G	E	D	L	I	A	.	.	.	.	.	.	.	D	L	E	N	G	F	R	A	A	N	K	G
Query Conservation																																			.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	N	R	N	L	R	L	A	P	T	R	P	P	V	E	E	V	R	T	A	X	Q	V	V	A	A	C	I	R	L	A	T	E	E	Y	R	A	G
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S								S	S	S																									T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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