Return to main results Retrieve Phyre Job Id

Job DescriptionP00935
Confidence99.91%DateWed Jan 25 15:20:10 GMT 2012
Rank154Aligned Residues297
% Identity13%Templatec3eibB_
PDB info PDB header:transferaseChain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   46...50... ......60..... ....70.........80.........90.........100.........110....
Predicted Secondary structure 





.
......















....
Query SS confidence 







.











. . . . . .
















































. . . .
Query Sequence  YSRRGNPT. RDVVQRALAELE. . . . . . GGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR. . . .
Query Conservation 
 
   
 .   

   
   ......
 
  
   

  

   
 

   

 

                   ....
Alig confidence 







.











......


















.




























....
Template Conservation     
    
   

 


           
 
 

 
         . 
   

 


  
 
          
      
Template Sequence  YSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRLQ. VMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFN
Template Known Secondary structure 


S

TT

TTTT

GGGS
.
TT

S

TTT
S

Template Predicted Secondary structure 

















.











Template SS confidence 















































































   91........100.........110.........120.........130...... ...140.........150.........160.........
 
   115....120.........130.........140.........150... ......160.........170.........180.....
Predicted Secondary structure  ......



















...












Query SS confidence  . . . . . .






































. . .































Query Sequence  . . . . . . GCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRV. . . VDIAKICHLAREVGAVSVVDNTFLSPALQNPL
Query Conservation  ......        
  
   
          
      
  
  ...  
  
  

   
  



 
 
 
      
Alig confidence  ......






































...































Template Conservation                                  
 
  
 



          
   
      

 
  
         
Template Sequence  TDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNP
Template Known Secondary structure  TTTTTT

TTTTT


GGG



SSS
TTT




T

TTGGG

SS

Template Predicted Secondary structure 













































Template SS confidence 















































































   170.........180.........190.........200.........210.........220.........230.........240.........
 
   186. ..190.........200.........210......... 220.........230.........240.....
Predicted Secondary structure  ........

















.......








.....
Query SS confidence 

. . . . . . . .































. . . . . . .

























. . . . .
Query Sequence  AL. . . . . . . . GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV. . . . . . . TELAWWANNIGVTGGAFDSYLLLRGL. . . . .
Query Conservation    ........
 
    
  
   
      
          .......  
       
       
      
.....
Alig confidence 

........
















.













.......

























.....
Template Conservation               
   
 

     
.

 
 
      
                          
      
     
Template Sequence  RSIFEIPGAEEVAMETASFSNYAGFTG. VRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGL
Template Known Secondary structure  SSGGGSTTGGGTSSTTT.T



TT
B
TTS
B


S
SS
Template Predicted Secondary structure 














.













Template SS confidence 















































































   250.........260.........270...... ...280.........290.........300.........310.........320........
 
   246...250.........260.........270.........280.........290.........300.........310.........320.....
Predicted Secondary structure 




















Query SS confidence 















































































Query Sequence  RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAE
Query Conservation               
  
   
     
       
                   
   
             
    
  
Alig confidence 























..................



















.
















Template Conservation                  
   
   ..................
     
  
  
       .         
   

 
Template Sequence  EAMHKVIGFYKENTNIIIDTFTSL. . . . . . . . . . . . . . . . . . GYDVYGGKNAPYVWVHFPNQ. SSWDVFAEILEKTHVVT
Template Known Secondary structure  T..................T


SSSS
TTS.


Template Predicted Secondary structure 
..................










.


Template SS confidence 















































































   329330.........340.........350.. .......360.........370.. .......380.........
 
   326...330.........340.........350.........360.........370.........380.....
Predicted Secondary structure 






























Query SS confidence 



























































Query Sequence  SLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANK
Query Conservation 
 
   

                    
     





 
   


  
  

 
   
Alig confidence 







.....................











.

















Template Conservation   

  
  .....................     



   .  
 
  

 

   
  
Template Sequence  TPGSGFGP. . . . . . . . . . . . . . . . . . . . . GGEGFVRVSAFG. HRENILEACRRFKQLYKH
Template Known Secondary structure  GGGG
G.....................GGTT

S.
TT
Template Predicted Secondary structure 



.....................





.
Template SS confidence 



























































   390....... ..400......... 410.........420.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions