Phyre 2 alignment of P00935 with c3cbfA

Job Description P00935
Confidence 99.94% Date Wed Jan 25 15:20:10 GMT 2012

Rank 99 Aligned Residues 305

% Identity 17% Template c3cbfA_

PDB info PDB header:transferase Chain: A: PDB Molecule:alpha-aminodipate aminotransferase; PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27

Resolution 1.67 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	48	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure							.															.	.
Query SS confidence							.															.	.
Query Sequence	R	R	G	N	P	T	.	R	D	V	V	Q	R	A	L	A	E	L	E	G	G	.	.	A	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	C	Y	R	V	L	F	V	D	Q
Query Conservation							.															.	.
Alig confidence							.															.	.
Template Conservation
Template Sequence	Q	Y	S	P	T	E	G	Y	A	P	L	R	A	F	V	A	E	W	I	G	V	R	P	E	E	V	L	I	T	T	G	S	Q	Q	A	L	D	L	V	G	K	V	F	L	D	E	G	S	P	V	L	L	E	A	P	S	Y	M	G	A	I	Q	A	F	R	L	Q	G	P	R	F	L	T	V	P	A	G	E	E	G
Template Known Secondary structure	S				T	T														T	S		G	G	G					S	S															T	T								S											T	T											T	T
Template Predicted Secondary structure
Template SS confidence
	69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

	125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.						.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.										.	.	190
Predicted Secondary structure																				.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Query Sequence	G	D	E	Q	A	L	R	A	A	L	A	E	K	P	K	L	V	L	V	.	.	.	.	.	E	S	P	S	N	P	L	L	R	V	V	D	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	S	P	A	L	Q	N	P	L	A	L	.	.	.	.	.	.	.	.	.	G	A	D
Query Conservation																				.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	P	D	L	D	A	L	E	E	V	L	K	R	E	R	P	R	F	L	Y	L	I	P	S	F	Q	N	P	T	G	G	L	T	P	L	P	A	R	K	R	L	L	Q	M	V	M	E	R	G	L	V	V	V	E	D	D	A	Y	R	E	L	Y	F	G	E	A	R	L	P	S	L	F	E	L	A	R	E	A	G	Y	P
Template Known Secondary structure																S							B	S		T	T	T			B																	T								T	T	T	T		B		S	S														T
Template Predicted Secondary structure
Template SS confidence
	149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

	191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L	L	L	R	G	L	R	T	L	V	P	R	M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y	L	Q	T	Q	P
Query Conservation
Alig confidence																																																																															.	.
Template Conservation																																																																															.	.
Template Sequence	G	V	I	Y	L	G	S	F	S	K	V	L	S	P	G	L	R	V	A	F	A	V	A	H	P	E	A	L	Q	K	L	V	Q	A	K	Q	G	A	D	L	H	T	P	M	L	N	Q	M	L	V	H	E	L	L	K	E	G	F	S	E	R	L	E	R	V	R	R	V	Y	R	E	K	A	Q	A	M	L	H	.	.
Template Known Secondary structure								S	T	T	T	T		S	T	T																								S	S														T	T	T																						.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
	229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

	271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M	T	H	A	G	M	A	P	E	A	R
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.														.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.														.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	A	L	D	R	E	V	P	K	E	V	R	Y	T	.	.	.	.	.	.	.	.	.	R	P	K	G	G	M	F	V	W	M	E	L	P	.	K	G	L	S	A	E	G	L	F	R	R	A	L	E	E	N	V	A	F	V	P	G	G	P	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S		T	T	S				.	.	.	.	.	.	.	.	.			S	B	S	S								.	T	T													T	T						S	G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.														.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	307	.	.	310	.	.	.	.	.	.	.	.	.										320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

	351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.				.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	I	E	D	G	E	D	L	.	.	.	I	A	D	L	E	N	G	F	R	A	A
Query Conservation																							.	.	.
Alig confidence	.																						.	.	.
Template Conservation	.
Template Sequence	.	A	N	G	G	G	E	N	T	L	R	L	S	Y	A	T	L	D	R	E	G	I	A	E	G	V	R	R	L	G	R	A	L	K	G	L
Template Known Secondary structure	.	T	T	S			T	T							S	S	S
Template Predicted Secondary structure	.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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