Job Description P00935 Confidence 99.90% Date Wed Jan 25 15:20:10 GMT 2012 Rank 161 Aligned Residues 283 % Identity 14% Template c3asaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis Resolution 2.05 Å

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		55	.	.	.	.	60	.	.	.	.	.						.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		D	V	V	Q	R	A	L	A	E	L	E	.	.	.	.	.	G	G	A	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	C	Y	R	V	L	F	V	D	Q	G	D	E	Q	A
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.																	.																																		.
Template Conservation																																		.																																		.
Template Sequence		P	A	L	R	Q	K	L	S	E	D	F	Y	R	G	F	V	D	A	K	E	I	F	I	S	D	G	A	K	V	D	L	F	.	R	L	L	S	F	F	G	P	N	Q	T	V	A	I	Q	D	P	S	Y	P	A	Y	L	D	I	A	R	L	T	G	A	K	E	.	I	I	A	L	P	C	L	Q	E	N	A	F	F
Template Known Secondary structure											T	T	S	T	T	S	S		G	G	G					S								.								S	S								S												T	T		S		.								G	G	G	T	T
Template Predicted Secondary structure																																		.																																		.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.										.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.																														.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.																														.	.	.	.	.	.	.	.	.
Query Sequence		L	R	A	A	L	A	E	K	P	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	V	.	.	.	D	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	S	P	A	L	Q	N	.	.	.	.	.	.	.	.	.	P	L	A	L	G	A	D	L	V	L	H	S	C	T
Query Conservation																											.	.	.																														.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	F	P	E	D	T	H	I	D	I	L	C	L	C	S	P	N	N	P	T	G	T	V	L	N	K	D	Q	L	R	A	I	V	H	Y	A	I	E	H	E	I	L	I	L	F	D	A	A	Y	S	T	F	I	S	D	P	S	L	P	K	S	I	F	E	I	P	D	A	R	F	C	A	I	E	I	N	S	F	S
Template Known Secondary structure						T	T				S						S	S		T	T	T																			T	T								T	T	G	G	G				T	T	S		S	S	G	G	G	S	T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.								.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.																														.	.
Query SS confidence																						.	.	.	.	.	.	.																														.	.
Query Sequence		K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	.	.	.	.	.	.	.	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L	L	L	R	G	L	R	.	.	T	L	V	P	R	M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y	L	Q	T
Query Conservation																						.	.	.	.	.	.	.																														.	.
Alig confidence									.													.	.	.	.	.	.	.																														.	.
Template Conservation									.
Template Sequence		K	P	L	G	F	A	G	.	I	R	L	G	W	T	V	I	P	Q	E	L	T	Y	A	D	G	H	F	V	I	Q	D	W	E	R	F	L	S	T	T	F	N	G	A	S	I	P	A	Q	E	A	G	V	A	G	L	S	I	L	P	Q	L	E	A	I	H	Y	Y	R	E	N	S	D	L	L	R	K	A	L	L	A
Template Known Secondary structure		G	G	G	T	T	T	T	.										T	T		B		T	T	S		B																															T	T	T
Template Predicted Secondary structure									.
Template SS confidence
		236	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	Q	T	L	R	R	F	L	G	G	.	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M	T	H	A	G	M	A	P
Query Conservation																																																			.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	E	V	F	G	G	E	H	A	P	Y	L	W	V	K	P	T	Q	A	N	I	S	D	R	D	L	F	D	F	F	L	R	E	Y	H	I	A	I	T	P	G	I	G	F	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							S	S	S	S									T	T			T	T	T										S						G	G	G	G		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		315																			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	I	E	D	G	E	D	L	I	A	D	L	E	N	G	F	R	A	A	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.															.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	S	G	S	G	F	V	R	F	S	S	L	G	K	R	.	.	.	.	.	E	D	I	L	A	A	C	E	R	L	Q
Template Known Secondary structure		.	.	.	.	.	.	.	G	G	T	T								S			.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.															.	.	.	.	.
Template SS confidence
									363	.	.	.	.	.	.	370	.	.	.	.	.	.						.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions