Job Description P00935 Confidence 99.81% Date Wed Jan 25 15:20:10 GMT 2012 Rank 218 Aligned Residues 293 % Identity 14% Template c2qmaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Resolution 1.81 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.																					.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.									.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.									.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	R	R	G	N	P	T	R	D	V	V	Q	R	A	.	.	.	.	L	A	E	L	E	G	G	A	.	.	.	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	P	G	D	L	L	V	A	P	H
Query Conservation																	.	.	.	.									.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.									.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	S	W	D	Q	A	S	S	A	T	Y	V	E	Q	K	V	V	N	W	L	C	D	K	Y	D	L	S	E	K	A	D	G	I	F	T	S	G	G	T	Q	S	N	Q	X	G	L	X	L	A	R	D	W	I	A	D	K	L	S	G	H	S	I	Q	K	L	G	L	P	D	Y	A	D	K	L	R	I	V	C	S	K
Template Known Secondary structure		T		G	G	G																			T	T			T	T							S	S																														S		T	T	G	G	G							T
Template Predicted Secondary structure
Template SS confidence
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.							.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.											.	.	.														.	.	.	.	.	.
Query SS confidence																			.											.	.	.														.	.	.	.	.	.
Query Sequence		D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	.	C	Y	R	V	L	F	V	D	Q	G	.	.	.	D	E	Q	A	L	R	A	A	L	A	E	K	P	.	.	.	.	.	.	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	V	D	I	A	K	I	C	H	L	A	R	E	V	G	A
Query Conservation																			.											.	.	.														.	.	.	.	.	.
Alig confidence																			.											.	.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	H	F	T	V	Q	K	S	A	S	W	X	G	L	G	E	K	A	V	X	T	V	D	A	N	A	D	G	T	X	D	I	T	K	L	D	E	V	I	A	Q	A	K	A	E	G	L	I	P	F	A	I	V	G	T	A	G	T	T	D	H	G	A	I	D	D	L	D	F	I	A	D	X	A	V	K	H	D	X
Template Known Secondary structure		T	S		T									T	T	S		G	G	G						B		T	T	S		B															T	T										B	S		T	T	T			B														T
Template Predicted Secondary structure
Template SS confidence
		671	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750
		169	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.						.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure													.									.	.	.	.	.
Query SS confidence													.									.	.	.	.	.
Query Sequence		V	S	V	V	D	N	T	F	L	S	P	.	A	L	Q	N	P	L	A	L	.	.	.	.	.	G	A	D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L	L	L
Query Conservation													.									.	.	.	.	.
Alig confidence													.									.	.	.	.	.																			.	.														.	.	.	.	.	.	.
Template Conservation																																													.	.														.	.	.	.	.	.	.
Template Sequence		W	X	H	V	D	G	A	Y	G	G	A	L	I	L	S	S	H	K	S	R	L	K	G	V	E	R	A	H	S	I	S	V	D	F	H	K	L	F	Y	Q	T	I	S	.	.	C	G	A	L	L	V	N	D	K	S	N	F	K	.	.	.	.	.	.	.	F	L	L	K	R	F	D	A	L	K	V	F	X	T	X
Template Known Secondary structure								T	T	G	G	G	G	G	G	S	T	T	G	G	G	G	T	T	G	G	G		S						T	T	S	T	T				S	S	.	.							S		G	G	G	G	G	.	.	.	.	.	.	.	G	G					T
Template Predicted Secondary structure																																													.	.														.	.	.	.	.	.	.
Template SS confidence
		751	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.			.	.	.	.	.	.	800	.	.	.	.	.	.								.	.	.	810	.	.	.	.	.	.	.	.	.	820	.
		243			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		R	.	.	G	L	R	T	L	V	P	R	M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y	L	Q	T	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	Q	T	L	R	R	F	L	G	G	L	S	L
Query Conservation			.	.
Alig confidence			.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	N	V	G	P	K	A	L	G	D	X	Y	D	H	L	L	A	Q	T	L	E	V	A	D	X	I	R	T	N	D	Q	F	E	L	L	A	E	P	S	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	L	F	R	A	T	H	E	T	A	D	L	D	E	L	N	K	A	L	R	L
Template Known Secondary structure				T																									T		T	T					S			S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		846	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.																		.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M	T	H	A	G	M	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	.	I	E	D	G	E	D	L	I	A	D	L	E	N	G	F	R	A	A
Query Conservation																																															.
Alig confidence			.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation			.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	.	.	A	L	T	R	G	I	A	V	L	G	E	T	I	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	T	A	L	K	F	T	I	L	N	P	C	L	T	T	S	D	F	E	S	L	L	S	K	I	N	X	L
Template Known Secondary structure			.	.					T	S		B							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T											T	T
Template Predicted Secondary structure			.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		909			910	.	.	.	.	.	.	.	.	.	920	.	.	.	.																		.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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