Job Description P00935 Confidence 99.86% Date Wed Jan 25 15:20:10 GMT 2012 Rank 198 Aligned Residues 312 % Identity 9% Template c2okkA_ PDB info PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) Resolution 2.30 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.															.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																	.	.	.	.									.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.									.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	R	R	G	N	P	T	R	D	V	V	Q	R	A	.	.	.	.	L	A	E	L	E	G	G	A	.	.	.	.	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G
Query Conservation																	.	.	.	.									.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.									.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	T	Y	E	I	A	P	V	F	V	L	L	E	Y	V	T	L	K	K	M	R	E	I	I	G	W	P	G	G	S	G	D	G	I	F	S	P	G	G	A	I	S	N	M	Y	A	M	M	I	A	R	F	K	M	F	P	E	V	K	E	K	G	M	A	A	L	P	R	L	I	A	F	T	S	E	H	S	H	F	S
Template Known Secondary structure		S		T	T	T																				T		G	G	G		S						S	S																		T	T						G	G	G	S									T	T	S		T
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.							.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure														.											.	.	.														.	.	.	.	.	.
Query SS confidence														.											.	.	.														.	.	.	.	.	.
Query Sequence		S	Y	R	L	F	D	S	L	A	K	R	G	.	C	Y	R	V	L	F	V	D	Q	G	.	.	.	D	E	Q	A	L	R	A	A	L	A	E	K	P	.	.	.	.	.	.	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	V	D	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D
Query Conservation														.											.	.	.														.	.	.	.	.	.
Alig confidence														.											.	.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	K	G	A	A	A	L	G	I	G	T	D	S	V	I	L	I	K	C	D	E	R	G	K	M	I	P	S	D	L	E	R	R	I	L	E	A	K	Q	K	G	F	V	P	F	L	V	S	A	T	A	G	T	T	V	Y	G	A	F	D	P	L	L	A	V	A	D	I	C	K	K	Y	K	I	W	M	H	V	D
Template Known Secondary structure									T	T	S		G	G	G						B		T	T	S		B															T	T										B	S		T	T	T			B														T
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.								.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.
Query Sequence		N	T	F	L	S	P	A	L	Q	N	P	L	A	L	G	.	.	.	.	.	.	.	A	D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L	L	L	R	G	L	R
Query Conservation																	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.																	.	.	.																						.	.
Template Conservation																																								.	.	.																						.	.
Template Sequence		A	A	W	G	G	G	L	L	M	S	R	K	H	K	W	K	L	S	G	V	E	R	A	N	S	V	T	W	N	P	H	M	M	G	V	P	L	Q	.	.	.	C	S	A	L	L	V	R	E	E	G	L	M	Q	N	C	N	Q	M	H	D	L	.	.	S	Y	D	T	G	D	K	A	L	Q	C	G	R	H	V	D
Template Known Secondary structure			T	T	G	G	G	G	G	G		T	T	T	G	G	G	G	T	T	G	G	G		S												S	S		.	.	.							S	S	T	T											G	.	.	G	G			G	G	G	S	S		S	S
Template Predicted Secondary structure																																								.	.	.																						.	.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.				.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.			.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310													.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	V	P	R	M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y	L	Q	T	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	L	R	R	F
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.
Template Sequence		V	F	K	L	W	L	M	W	R	A	K	G	T	T	G	F	E	A	H	V	D	K	C	L	E	L	A	E	Y	L	Y	N	I	I	K	N	R	E	G	Y	E	M	V	F	D	G	K	P	.	Q	H	T	N	V	C	F	W	Y	I	P	P	S	L	R	T	L	E	E	R	M	S	R	L	S	K	V	A	P	V	I
Template Known Secondary structure																																					T	S	T	T				S	S	S	S			.	S	S	S									T	T	T	T	T									T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M	T	H	A	G	M	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	.	I	E	D	G	E	D	L	I	A	D	L	E	N	G	F	R	A	A	N	K
Query Conservation																																																					.
Alig confidence											.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation											.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	R	M	M	E	Y	G	T	.	.	.	.	.	.	.	.	.	T	M	V	S	Y	Q	P	L	G	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	F	F	R	M	V	I	S	N	P	A	A	T	H	Q	D	I	D	F	L	I	E	E	I	E	R	L	G	Q
Template Known Secondary structure									T	S	.	.	.	.	.	.	.	.	.									T	T		.	.	.	.	.	.	.	.	.	.	.	.	.											T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		534	.	.	.	.	.	540	.	.										.	.	.	.	.	.	.	550	.	.	.														.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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