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Job DescriptionP00935
Confidence100.00%DateWed Jan 25 15:20:10 GMT 2012
Rank13Aligned Residues378
% Identity31%Templatec2gqnB_
PDB info PDB header:lyaseChain: B: PDB Molecule:cystathionine beta-lyase; PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40 .........50.........60.........70...
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Query Sequence  RKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNE. . . . . . . . . PRAHDYSRRGNPTRDVVQRALAELEGGAGAVLT
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Template Sequence  KKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLF
Template Known Secondary structure 

TT

TTSSS





SB


SSTTTTTS

BGGG

T
S
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   74.....80.........90.........100.........110.........120.........130.........140.........150...
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Query Sequence  NTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRV
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Template Sequence  PCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEV
Template Known Secondary structure  SS

TT
TTS
TGGGGT

TT
GGGGGGG

TTSS
TTT


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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   154.....160..... ....170.........180.........190.........200.........210.........220.........230.
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Query Sequence  VDIAKICHLARE. . VGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV
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Template Sequence  HDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVC. NARCWEQLRENAYLMGQ
Template Known Secondary structure 


TT

TTTTTTSS
GGGGT
STTTTTT
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TT
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   164.....170.........180.........190.........200.........210.........220..... ....230.........240..
 
   232.......240.........250.........260.........270.........280.........290.........300...... ...
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Query Sequence  TGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG. . DEQ
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Template Sequence  MVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNE
Template Known Secondary structure 


TT
TT
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   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   310.........320.........330.........340.........350.........360.........370.........380...
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Query Sequence  TLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA
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Template Sequence  ELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQ. . GEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI
Template Known Secondary structure  TT
SS

S


SSS

TT
TT..S




S


SS
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   323......330.........340.........350.........360. ........370.........380.........390....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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