 |
Job Description | P00935 | Confidence | 76.92% | Date | Wed Jan 25 15:20:10 GMT 2012 |
Rank | 246 | Aligned Residues | 104 |
% Identity | 15% | Template | c1luaA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:methylene tetrahydromethanopterin dehydrogenase; |
PDBTitle: structure of methylene-tetrahydromethanopterin dehydrogenase from2 methylobacterium extorquens am1 complexed with nadp
|
Resolution | 1.90 Å |
|
 |
  |   |
54 | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | D | V | V | Q | R | A | L | A | E | L | E | G | G | A | G | A | V | L | T | N | T | G | M | S | A | I | H | L | V | T | T | V | F | L | K | P | G | D | L | L | V | A | P | H | D | C | Y | G | G | S | Y | R | L | F | D | S | L | A | K | R | G | C | Y | R | V | L | F | V | D | Q | G | D | E | Q | A | L | R | A | A |
Query Conservation |   |
  |   |   |
|
|   |   |   |
|   |   |   |
|   |
|   |   |
|   |   |   |
|
|   |   |
|
|   |   |   |
|   |
|
|   |   |   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |
|   |
|
|   |
|   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
V | A | L | V | V | K | A | A | G | G | S | V | K | G | K | K | A | V | V | L | A | G | T | G | P | V | G | M | R | S | A | A | L | L | A | G | E | G | A | E | V | V | L | C | G | R | K | L | D | K | A | Q | A | A | A | D | S | V | N | K | R | F | K | V | N | V | T | A | A | E | T | A | D | D | A | S | R | A | E | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T | S |
|
| T | T |
|  |  |  |  |  | T | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
|  |  |  |  |
|
| S |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
107 | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . |
  |
  |   |
134 | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | A | E | K | P | K | L | V | L | V | E | S | P | S | N | P | L | L | R | V | V | D | I | A |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|
|
|   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
V | K | G | A | H | F | V | F | T | A | G | A | I | G | L | E | L | L | P | Q | A | A | W | Q |
Template Known Secondary structure |   |
T | T | T |
| S |  |  |  |  |
|
|
| T | T |
|
|
| B |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
187 | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|