Job Description P0AGA6 Confidence 99.83% Date Thu Jan 5 11:28:37 GMT 2012 Rank 6 Aligned Residues 186 % Identity 24% Template c3q9sA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		T	V	A	L	I	D	D	H	L	I	V	R	S	G	F	A	Q	L	L	G	L	E	P	D	L	Q	V	V	A	E	F	G	S	G	R	E	A	L	A	G	L	P	G	R	G	V	Q	V	C	I	C	D	I	S	M	P	D	I	S	G	L	E	L	L	S	Q	L	.	.	P	K	G	M	A	T	I	M	L	S	V
Query Conservation																																																																					.	.
Alig confidence																									.	.																																											.	.
Template Conservation																									.	.
Template Sequence		R	I	L	V	I	E	D	D	H	D	I	A	N	V	L	R	X	D	L	T	D	A	G	.	.	Y	V	V	D	H	A	D	S	A	X	N	G	L	I	K	A	R	E	D	H	P	D	L	I	L	L	D	L	G	L	P	D	F	D	G	G	D	V	V	Q	R	L	R	K	N	S	A	L	P	I	I	V	L	T	A
Template Known Secondary structure								S														T	T	T	.	.							S	S											S			S								S														T	T										S
Template Predicted Secondary structure																									.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.										.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.
Query Sequence		H	D	S	P	A	L	V	E	Q	A	L	N	A	G	A	R	G	F	L	S	K	R	C	S	P	D	E	L	I	A	A	V	H	T	V	A	T	G	G	C	Y	L	T	P	D	I	A	I	.	.	.	.	.	.	.	.	.	K	L	A	S	G	R	Q	D	P	L	T	K	R	E	R	Q	V	A	E	K	L	A	Q
Query Conservation																																																		.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	T	V	E	E	K	V	R	L	L	G	L	G	A	D	D	Y	L	I	K	P	F	H	P	D	E	L	L	A	R	V	K	V	Q	L	R	Q	R	T	S	E	S	L	S	X	G	D	L	T	L	D	P	Q	K	R	L	V	T	Y	K	G	E	E	L	R	L	S	P	K	E	F	D	I	L	A	L	L	I	R
Template Known Secondary structure				S											T		S					S	S																			S						T	T					T	T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		152					.	.	.	.	.	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure			.	.	.	.											.	.	.	.	.
Query SS confidence			.	.	.	.											.	.	.	.	.
Query Sequence		G	.	.	.	.	M	A	V	K	E	I	A	A	E	L	.	.	.	.	.	G	L	S	P	K	T	V	H	V	H	R	A	N	L	M	E	K	L	G	V	S	N	D	V	E	L	A	R
Query Conservation			.	.	.	.											.	.	.	.	.
Alig confidence			.	.	.	.											.	.	.	.	.
Template Conservation
Template Sequence		Q	P	G	R	V	Y	S	R	Q	E	I	G	Q	E	I	W	Q	G	R	L	P	E	G	S	N	V	V	D	V	H	X	A	N	L	R	A	K	L	R	D	L	D	G	Y	G	L	L	R
Template Known Secondary structure		S	T	T														T	T		S		T	T		S																	S				S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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