Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGA6
Confidence70.99%DateThu Jan 5 11:28:37 GMT 2012
Rank463Aligned Residues40
% Identity18%Templatec1umqA_
PDB info PDB header:dna-binding proteinChain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   140.........150.........160.........170.........180...
Predicted Secondary structure 
















Query SS confidence 











































Query Sequence  KRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVS
Query Conservation   

  

     
 
  


  
 

  

  
   
  

 
 
Alig confidence 






























....








Template Conservation 

  
  

    

   

  




 

 ....




   
Template Sequence  RWEHIQRIYEMCDRNVSETARRLNMHRRTLQ. . . . RILAKRSPR
Template Known Secondary structure  TTS
TS
....TSS

Template Predicted Secondary structure 





....


Template SS confidence 











































   42.......50.........60.........70.. .......80.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions