Job Description P77199 Confidence 38.83% Date Thu Jan 5 12:26:15 GMT 2012 Rank 48 Aligned Residues 173 % Identity 13% Template d2gufa1 SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 1.95

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		773	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	Q	T	A	Y	I	Y	S	S	A	H	F	A	N	N	V	F	V	D	G	S	L	S	Y	S	H	F	N	N	D	L	S	A	T	M	S	N	G	T	Y	V	D	G	S	T	N	S	D	A	W	G	F	G	L	K	A	G	Y	D	F	K	L	G	D	A	G	Y	V	T	P	Y	G	S	V	S	G	L	F	Q
Query Conservation
Alig confidence															.																																.	.	.																		.	.	.
Template Conservation															.																																.	.	.																		.	.	.
Template Sequence		K	S	K	Q	W	E	G	A	F	E	G	L	T	.	A	G	V	N	W	R	I	S	G	Y	R	N	D	V	S	D	L	I	D	Y	D	D	H	T	L	K	Y	Y	N	E	G	.	.	.	K	A	R	I	K	G	V	E	A	T	A	N	F	D	T	G	P	.	.	.	L	T	H	T	V	S	Y	D	Y	V	D	A
Template Known Secondary structure															.	T	T																				T	T	T	T							.	.	.																T	T	.	.	.
Template Predicted Secondary structure															.																																.	.	.																		.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.				.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.				.	.	.	.	.	480	.	.	.	.	.	.
		853	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	D	D	Y	Q	L	S	N	D	M	K	V	D	G	Q	S	Y	D	S	M	R	Y	E	L	G	V	D	A	G	Y	T	F	T	Y	S	E	D	Q	A	L	T	P	Y	F	K	L	A	Y	V	Y	D	D	S	N	N	D	N	D	V	N	G	D	S	I	D	N	G	T	E	G	S	A	V	R	V	G	L	G	T
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Sequence		R	N	A	I	T	.	.	.	.	.	.	.	.	D	T	P	L	L	R	R	A	K	Q	Q	V	K	Y	Q	L	D	W	Q	L	Y	D	.	.	.	.	.	.	.	F	D	W	G	I	T	Y	Q	Y	L	G	T	R	Y	D	K	D	Y	S	S	Y	P	Y	Q	T	V	K	M	G	G	V	S	L	W	D	L	A	V
Template Known Secondary structure				T	T	T	.	.	.	.	.	.	.	.			B		T	T			S												T	T	.	.	.	.	.	.	.																			S	S	S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template SS confidence
		487	.	.	490	.									.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.								.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
		933	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	S	F	T	K	N	F	S	A	Y	T	D	A	N	Y	L	G	G	G	D	V	D	Q	D	W	S	A	N	V	G	V	K	Y	T	W
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		A	Y	P	V	T	S	H	L	T	V	R	G	K	I	A	N	L	F	.	D	K	D	Y	A	G	R	E	Y	T	L	S	G	S	Y	T	F
Template Known Secondary structure					S	S	S	S									S	T	T	.
Template Predicted Secondary structure																				.
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions