Job Description P77199 Confidence 40.46% Date Thu Jan 5 12:26:15 GMT 2012 Rank 46 Aligned Residues 186 % Identity 11% Template d1kmoa_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.00

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		773	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.				.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		D	S	Q	T	A	Y	I	Y	S	S	A	H	F	A	N	N	V	F	V	D	G	S	L	S	Y	S	H	F	N	N	D	L	S	A	T	M	S	N	G	T	.	.	.	Y	V	D	G	S	T	N	S	D	A	W	G	F	G	L	K	A	G	Y	D	F	K	L	G	D	A	G	Y	V	T	P	Y	G	S	V	S	G
Query Conservation																																										.	.	.
Alig confidence															.																											.	.	.																											.	.
Template Conservation															.																																																								.	.
Template Sequence		K	A	R	T	W	E	L	G	T	R	Y	D	D	.	G	A	L	T	A	E	M	G	L	F	L	I	N	F	N	N	Q	Y	D	S	N	Q	T	N	D	T	V	T	A	R	G	K	T	R	H	T	G	L	E	T	Q	A	R	Y	D	L	G	T	L	T	P	T	L	D	N	.	.	V	S	I	Y	A	S	Y	A	Y
Template Known Secondary structure															.	S	S																S	S			S	S	S			T	T																		G	G	G	T		G	G	G	T	T	.	.
Template Predicted Secondary structure															.																																																								.	.
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.	.		.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.			.	.	.	.	.	.	610	.	.
		850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	Q	S	G	D	D	Y	Q	L	S	N	D	M	K	V	D	G	Q	S	Y	D	S	M	R	Y	E	L	G	V	D	A	G	Y	T	F	T	Y	S	E	D	Q	A	L	T	P	Y	F	K	L	A	Y	V	Y	D	D	S	N	N	D	N	D	V	N	G	D	S	I	D	N	G	T	E	G	S	A	V	R	V	G
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.
Template Sequence		V	N	A	E	I	R	E	K	G	D	T	Y	G	N	L	V	P	F	S	P	K	H	K	G	T	L	G	V	D	Y	K	P	.	.	.	.	.	.	.	G	N	W	T	F	N	L	N	S	D	F	Q	S	S	Q	F	A	D	N	A	N	T	V	K	E	S	A	D	G	S	T	G	R	I	P	G	F	M	L	W	G
Template Known Secondary structure								S	S	S	T	T	T	T		B		T	T			S												.	.	.	.	.	.	.	T	T													B		S	S	T	T				S			T	T	S	S	S	S		B
Template Predicted Secondary structure																																		.	.	.	.	.	.	.
Template SS confidence
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.								.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.
		930	.	.	.	.	.	.	.				.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.															.	.	.	.	.	960	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	T	Q	F	S	F	T	.	.	.	K	N	F	S	A	Y	T	D	A	N	Y	L	G	G	G	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	D	W	S	A	N	V	G	V	K	Y	T	W
Query Conservation										.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	V	A	Y	D	F	G	P	Q	M	A	D	L	N	L	A	F	G	V	K	N	I	F	D	Q	D	Y	F	I	R	S	Y	D	D	N	N	K	G	I	Y	A	G	Q	P	R	T	L	Y	M	Q	G	S	L	K	F
Template Known Secondary structure										T	T	T	T										S	T	T										S	S	T	T									S
Template Predicted Secondary structure
Template SS confidence
		686	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions