Job Description P77199 Confidence 85.99% Date Thu Jan 5 12:26:15 GMT 2012 Rank 40 Aligned Residues 183 % Identity 14% Template d1by5a_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.60

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		770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	Q	D	S	Q	T	A	Y	I	Y	S	S	A	H	F	A	N	N	V	F	V	D	G	S	L	S	Y	S	H	F	N	N	D	L	S	A	T	M	S	N	G	T	Y	V	D	G	S	T	N	S	D	A	W	G	F	G	L	K	A	G	Y	D	F	K	L	G	D	A	G	Y	V	T	P	Y	G	S	V	S	G
Query Conservation
Alig confidence																		.																														.	.																									.	.
Template Conservation																		.																														.	.																									.	.
Template Sequence		S	K	G	K	Q	Y	E	V	G	V	K	Y	V	P	E	D	.	R	P	I	V	V	T	G	A	V	Y	N	L	T	K	T	N	N	L	M	A	D	P	E	G	S	F	F	S	V	.	.	E	G	G	E	I	R	A	R	G	V	E	I	E	A	K	R	P	L	S	A	S	V	N	V	.	.	V	G	S	Y	T	Y
Template Known Secondary structure																S	S	.	S																					S	S			S				.	.																		S	S	S	S				.	.
Template Predicted Secondary structure																		.																														.	.																									.	.
Template SS confidence
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.		.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560			.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.			.	.	.	.	.	590
		850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	Q	S	G	D	D	Y	Q	L	S	N	D	M	K	V	D	G	Q	S	Y	D	S	M	R	Y	E	L	G	V	D	A	G	Y	T	F	T	Y	S	E	D	Q	A	L	T	P	Y	F	K	L	A	Y	V	Y	D	D	S	N	N	D	N	D	V	N	G	D	S	I	D	N	G	T	E	G	S	A	V	R	V	G
Query Conservation
Alig confidence																								.	.	.	.																														.	.	.	.	.	.	.
Template Conservation																								.	.	.	.																														.	.	.	.	.	.	.
Template Sequence		T	D	A	E	Y	T	T	D	T	T	Y	K	G	N	T	P	A	Q	V	P	K	H	.	.	.	.	M	A	S	L	W	A	D	Y	T	F	F	D	G	P	L	S	G	L	T	L	G	T	G	G	R	Y	T	G	S	.	.	.	.	.	.	.	S	Y	G	D	P	A	N	S	F	K	V	G	S	Y	T	V	V	D
Template Known Secondary structure										T	T	T	T	T				T	T			S		.	.	.	.												S	S	T	T	T	T													.	.	.	.	.	.	.			S	S	T	T			S
Template Predicted Secondary structure																								.	.	.	.																														.	.	.	.	.	.	.
Template SS confidence
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.					.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.								.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
		930	.	.	.	.	.	.	.	.					.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.													.	.	.	.	.	960	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	T	Q	F	S	F	T	K	.	.	.	.	N	F	S	A	Y	T	D	A	N	Y	L	G	G	G	D	V	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	D	W	S	A	N	V	G	V	K	Y	T	W
Query Conservation											.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	V	R	Y	D	L	A	R	V	G	M	A	G	S	N	V	A	L	H	V	N	N	L	F	D	R	E	Y	V	A	S	C	F	N	T	Y	G	C	F	W	G	A	E	R	Q	V	V	A	T	A	T	F	R	F
Template Known Secondary structure								T	T	T	T	T		T	T									S	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions