Job Description P77199 Confidence 10.18% Date Thu Jan 5 12:26:15 GMT 2012 Rank 57 Aligned Residues 647 % Identity 10% Template c3syjA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:adhesion and penetration protein autotransporter; PDBTitle: crystal structure of the haemophilus influenzae hap adhesin Resolution 2.20 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		A	I	T	S	Q	A	N	A	A	N	Y	D	T	W	T	Y	I	D	N	P	V	T	A	L	D	W	D	H	M	D	K	A	G	T	V	D	G	N	Y	V	N	Y	S	G	F	V	Y	Y	N	N	T	N	G	D	F	D	Q	S	F	N	G	D	T	V	N	G	T	.	I	S	T	Y	Y	L	N	H	D	Y	A	D
Query Conservation																																																																					.
Alig confidence																																																																					.
Template Conservation
Template Sequence		V	Y	T	I	S	G	N	D	N	G	Q	G	S	I	T	Q	K	S	G	I	P	S	E	I	K	I	T	L	A	N	M	S	L	P	L	K	E	K	D	K	V	H	N	P	R	Y	D	G	P	N	I	Y	S	P	R	L	N	N	G	E	T	L	Y	F	M	D	Q	K	Q	G	S	L	I	F	A	S	D	I	N	Q
Template Known Secondary structure									T									S	S	S	S	S	S									T	T	S		S	S							S	G	G	G		S										T									S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	A	N	Q	L	D	I	S	N	S	V	I	H	G	S	I	T	S	M	L	P	G	G	Y	Y	D	R	F	D	A	D	G	N	N	L	G	G	Y	D	F	Y	T	D	A	V	V	D	T	H	W	R	D	G	D	V	F	T	L	N	I	A	N	T	T	I	D	D	D	Y	E	A	L	Y	F	T	D	S	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	G	G	L	Y	F	E	G	N	F	T	V	S	P	N	S	N	Q	T	W	Q	G	A	G	I	H	V	S	E	N	S	T	V	T	W	K	V	N	G	V	E	H	D	R	L	S	K	I	G	K	G	T	L	H	V	Q	A	K	G	E	N	K	G	S	I	S	V	G	D	G	K	V	I	L	E	Q	Q	A	D
Template Known Secondary structure		T	T							S							S	S	S		B			S	S						T	T								B			T	T							S	S	S							B	S	B																	B
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	D	V	T	K	H	T	N	E	T	F	D	T	S	E	G	V	A	V	N	L	D	V	E	S	N	I	N	I	S	N	N	S	R	V	A	G	I	A	L	S	Q	G	N	T	Y	N	E	T	Y	T	T	E	S	H	T	W	D	N	N	I	S	V	K	D	S	T	V	T	S	G	S	N	Y	I	L	D	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	G	N	K	Q	A	F	S	E	I	G	L	V	S	G	R	G	T	V	Q	L	N	D	D	K	Q	F	D	T	D	K	F	Y	F	G	F	R	G	G	R	L	D	L	N	G	H	S	L	T	F	K	R	I	Q	N	T	D	E	G	A	M	I	V	N	H	N	T	T	Q	A	A	N	V	T	I	T	G	N	E
Template Known Secondary structure		T	T				B	S		S														S	S	S	S		S		G	G	G					T	T							T	T						S	S					S	T	T								S	S	S										S
Template Predicted Secondary structure
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	G	K	T	G	H	F	G	N	S	D	E	P	S	D	Y	A	G	P	G	D	V	A	M	S	F	T	A	S	G	S	D	Y	A	M	K	N	N	V	F	L	S	N	S	T	L	M	G	D	V	A	F	T	S	T	W	N	S	N	F	D	P	N	G	H	D	S	N	G	D	G	V	K	D	T	N	G	G	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	V	L	P	N	G	N	N	I	N	K	L	D	Y	R	K	E	I	A	Y	N	G	W	F	G	E	T	D	K	N	K	H	N	G	R	L	N	L	I	Y	K	P	T	T	E	D	R	T	L	L	L	S	G	G	T	N	L	K	G	D	I	T	Q	T	K	G	K	L	F	F	S	G	R	P	T	P	H	A	Y
Template Known Secondary structure				S				S	S				G	G	G	G		S						S			S				T	T	S												S	S	S	S							S					S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	D	S	L	N	V	D	E	L	N	L	T	L	D	N	G	S	K	W	V	G	Q	A	I	Y	N	V	A	E	T	S	A	M	Y	D	V	A	T	N	S	L	T	P	D	A	T	Y	E	N	N	D	W	K	R	V	V	D	D	K	V	F	Q	S	G	V	F	N	V	A	L	N	N	G	S	E	W	D	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	H	L	N	K	R	W	S	E	M	E	G	I	P	Q	G	E	I	V	W	D	H	D	W	I	N	R	T	F	K	A	E	N	F	Q	I	K	G	G	S	A	V	V	S	R	N	V	S	S	I	E	G	N	W	T	V	S	N	N	A	N	A	T	F	G	V	V	P	N	Q	Q	N	T	I	C	T	R	S	D	W
Template Known Secondary structure		B											T			S	B					T	T																S	S						S	S												T	T									T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	S	I	V	D	T	L	T	V	N	N	G	S	Q	V	N	V	S	E	S	K	L	T	S	D	T	I	D	L	T	N	G	S	S	L	N	I	G	E	D	G	Y	V	D	T	D	H	L	T	I	N	S	Y	S	T	V	A	L	T	E	S	T	G	W	G	A	D	Y	N	L	Y	A	N	T	I	T	V	T	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	L	T	T	C	Q	K	V	D	L	T	D	T	K	V	I	N	S	I	P	K	T	Q	I	N	G	S	I	N	L	T	D	N	A	T	A	N	V	K	G	L	A	K	L	N	G	N	V	T	L	T	N	H	S	Q	F	T	L	S	N	N	A	T	Q	I	G	N	I	R	L	S	D	N	S	T	A	T	V	D
Template Known Secondary structure		T																			S							S						T	T							S	S					S						T	T							T	T					S						T	T
Template Predicted Secondary structure
Template SS confidence
		704	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	V	L	D	V	N	V	D	Q	F	D	T	E	A	F	R	T	D	K	L	E	L	T	S	G	N	I	A	D	H	N	G	N	V	V	S	G	V	F	D	I	H	S	S	D	Y	V	L	N	A	D	L	V	N	D	R	T	W	D	T	S	K	S	N	Y	G	Y	G	I	V	A	M	N	S	D	G	H	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	N	L	N	G	N	V	H	L	T	D	S	A	Q	F	S	L	K	N	S	H	F	S	H	Q	I	Q	G	D	K	G	T	T	V	T	L	E	N	A	T	W	T	M	P	S	D	T	T	L	Q	N	L	T	L	N	N	S	T	I	T	L	N	S	A	Y	S	R	F	N	T	L	T	V	N	G	K	L	S	G
Template Known Secondary structure		S	S				S						T	T							S					S						T	T							S							S					S											S		G	G	G										S
Template Predicted Secondary structure
Template SS confidence
		784	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.
		579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640			.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		I	N	G	N	G	D	V	D	N	G	T	E	L	D	N	S	S	V	D	N	V	V	A	A	T	G	N	Y	K	V	R	I	D	N	A	T	G	A	G	A	I	A	D	Y	K	D	K	E	I	I	Y	V	N	D	V	N	S	N	A	T	F	S	.	.	A	A	N	K	A	D	L	G	A	Y	T	Y	Q	A	E	Q
Query Conservation																																																																.	.
Alig confidence																																																																.	.
Template Conservation
Template Sequence		Q	G	T	F	Q	F	T	S	S	L	F	G	Y	K	S	D	K	L	K	L	S	N	D	A	E	G	D	Y	I	L	S	V	R	N	T	G	K	E	P	E	T	L	E	Q	L	T	L	V	E	S	K	D	N	Q	P	L	S	D	K	L	K	F	T	L	E	N	D	H	V	D	A	G	A	L	R	Y	K	L	V	K
Template Known Secondary structure											T	T	T	T									T	T													S				S	S										S	S	S	S				T	T						T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		887	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.
		657	.	.	660	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	N	T	V	V	L	Q	Q	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	D	G	E	F	R	L	H	N	P
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		967	.	.	970	.	.	.	.	.	.