Job Description P77199 Confidence 10.04% Date Thu Jan 5 12:26:15 GMT 2012 Rank 58 Aligned Residues 217 % Identity 12% Template c3rbhC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:alginate production protein alge; PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa Resolution 2.30 Å

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		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.			790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		I	M	V	G	V	D	T	K	I	D	G	N	N	A	K	W	I	V	G	A	A	A	G	F	A	K	G	D	M	N	D	R	S	G	Q	V	D	Q	D	S	Q	T	A	Y	I	Y	S	S	A	H	F	A	N	N	V	.	.	F	V	D	G	S	L	S	Y	S	H	F	N	N	D	L	S	A	T	M	S	N	G	T
Query Conservation																																																									.	.
Alig confidence																																																									.	.																	.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		T	H	V	F	G	D	I	S	T	Q	W	A	P	H	H	R	I	G	V	R	I	H	H	A	D	D	S	D	K	T	Y	T	G	Q	L	T	W	L	G	I	E	A	T	G	D	A	Y	N	Y	R	S	S	X	P	L	N	Y	W	A	S	A	T	W	L	T	G	D	R	D	N	L	T	Q	.	.	.	.	.	.	.
Template Known Secondary structure														T	T																S															S	T	T		T	T		S		S																				.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		813	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.						.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		Y	V	D	G	S	T	N	S	D	A	W	G	F	G	L	K	A	G	Y	D	F	K	L	G	D	A	G	Y	V	T	P	Y	G	S	V	S	G	L	F	Q	S	G	D	D	Y	Q	L	S	N	.	.	.	.	.	D	M	K	V	D	G	Q	S	Y	D	S	M	R	Y	E	L	G	V	.	.	.	.	.	.	.	.
Query Conservation																																																			.	.	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence		.	.									.	.	.	.												.	.	.	.																					.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation		.	.									.	.	.	.												.	.	.	.
Template Sequence		.	.	S	G	D	V	N	A	F	G	.	.	.	.	V	D	L	G	L	R	W	N	I	D	E	.	.	.	.	Q	W	K	A	G	V	G	Y	A	R	G	S	G	G	G	K	D	G	E	E	Q	F	Q	Q	T	G	L	E	S	N	R	S	N	F	T	G	T	R	S	R	V	H	R	F	G	E	A	F	R	G	E
Template Known Secondary structure		.	.									.	.	.	.										S	S	.	.	.	.	S														S	G	G	G	T	T						S	B							T	T	S	S	S	S				T	T		T	T	T
Template Predicted Secondary structure		.	.									.	.	.	.												.	.	.	.
Template SS confidence
				304	.	.	.	.	.	310	.					.	.	.	.	.	.	.	.	320	.	.					.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
									880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.		.	.	.	.	930	.	.	.	.	.	.	.	.	.	940
Predicted Secondary structure		.	.	.	.	.	.	.																																															.																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																															.																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	D	A	G	Y	T	F	T	Y	S	E	D	Q	A	L	T	P	Y	F	K	L	A	Y	V	Y	D	D	S	N	N	D	N	D	V	N	G	D	S	I	D	N	G	T	E	G	S	A	.	V	R	V	G	L	G	T	Q	F	S	F	T	K	N	F	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.																																															.																.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																															.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	N	L	Q	A	A	T	L	F	G	S	W	Q	L	R	E	D	Y	D	A	S	L	V	Y	H	K	F	W	R	V	D	D	D	S	D	I	G	T	S	G	I	N	A	A	L	Q	P	G	E	K	D	I	G	Q	E	L	D	L	V	V	T	K	Y	F	K	Q	G	L	L	P	A	S	X	S	Q	Y	V	D	E
Template Known Secondary structure		S	S	S													T	T	T													S	S	T	T	S						S							T	T																	S	S	S				T	T	S	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
					941	.	.	.	.	.	.	.	.	950	.	.	.				.	.	.	.				.	.	960	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.														.	.	.					.	.	.
Query SS confidence		.	.	.														.	.	.					.	.	.
Query Sequence		.	.	.	S	A	Y	T	D	A	N	Y	L	G	G	G	D	.	.	.	V	D	Q	D	.	.	.	W	S	A	N	V	G	V	K	Y	T	W
Query Conservation		.	.	.														.	.	.					.	.	.
Alig confidence		.	.	.														.	.	.					.	.	.
Template Conservation
Template Sequence		P	S	A	L	I	R	F	R	G	G	L	F	K	P	G	D	A	Y	G	P	G	T	D	S	T	X	H	R	A	F	V	D	F	I	W	R	F
Template Known Secondary structure		S	S	S													T	T	S		T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions