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Job DescriptionP77199
Confidence100.00%DateThu Jan 5 12:26:15 GMT 2012
Rank3Aligned Residues248
% Identity22%Templatec3qq2C_
PDB info PDB header:membrane protein/protein transportChain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   706...710.........720.........730.........740.........750.........760.... .....770.........780....
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Query Sequence  DNGGAWVSYFGGNFNGDNGTINYDQDVNGIMVGVDTKIDGNNAKWIVGAAAGFAKGDMN. DRSGQVDQDSQTAYIYSSAH
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Template Sequence  DAGGPWARTFSERQQISNA. . . YDQTVSGLEIGLDRGWSASGGRWYAGGLLGYTYADRTYPGDGGGKVKGLHVGGYAAYV
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   745....750.........760... ......770.........780.........790.........800.........810.........820.
 
   785....790.........800.........810.........820.........830.........840.........850.........860....
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Query Sequence  FANNVFVDGSLSYSHFNNDLSATMSNGTYVDGSTNSDAWGFGLKAGYDFKLGDAGYVTPYGSVSGLFQSGDDYQLSNDMK
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Template Sequence  GDGGYYLDTVLRLGRYDQQYNIAGTDGGRVTADYRTSGAAWSLEGGRRFELPNDWFAEPQAEVMLWRTSGKRYRASNGLR
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   826...830.........840.........850.........860.........870.........880.........890.........900.....
 
   865....870.........880.........890.........900.........910.........920.........930.........940....
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Query Sequence  VDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKLAYVYDDSNNDNDVNGDSIDNGTEGSAVRVGLGTQFSFTKNFSAYT
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Template Sequence  VKVDANTATLGRLGLRFGRRIALAGGNIVQPYARLGWTQEFKSTG. . . . . . . . . . . . RHGRVELGAGVDAALGKGHNLYA
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   906...910.........920.........930.........940.........950 .........960.........970...
 
   945....950.........960........
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Query Sequence  DANYLGGGDVDQDWSANVGVKYTW
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Template Sequence  SYEYAAGDRINIPWSFHAGYRYSF
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   987..990.........1000.........1010
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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