Job Description P77199 Confidence 4.67% Date Thu Jan 5 12:26:15 GMT 2012 Rank 66 Aligned Residues 138 % Identity 12% Template c3fidA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:putative outer membrane protein (lpxr); PDBTitle: lpxr from salmonella typhimurium Resolution 1.90 Å

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		830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.				850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870		.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.																						.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.																						.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Y	D	F	K	L	G	D	A	G	Y	V	T	P	Y	G	S	V	S	G	.	.	.	L	F	Q	S	G	D	D	Y	Q	L	S	N	D	M	K	V	D	G	Q	S	Y	.	D	S	M	R	Y	E	L	G	V	D	A	G	Y	T	F	T	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.																						.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.																						.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	W	Q	D	Q	I	E	N	R	Y	G	Y	T	A	K	G	M	V	S	L	T	P	A	I	D	I	L	G	V	N	V	G	F	Y	P	E	V	S	A	V	G	G	N	L	F	Q	Y	L	G	Y	G	A	T	V	A	L	G	N	D	K	T	F	N	S	D	N	G	F	G	L	L	S	R	R	G	L	I	H	T	Q
Template Known Secondary structure		G	G	G	G		B																					T	T															S	S														S						T					G	G	G			T	T
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		888	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.				.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950			.	.	.	.	.	.	.	.	.	960	.	.
Predicted Secondary structure																						.	.	.																																												.	.
Query SS confidence																						.	.	.																																												.	.
Query Sequence		S	E	D	Q	A	L	T	P	Y	F	K	L	A	Y	V	Y	D	D	S	N	.	.	.	N	D	N	D	V	N	G	D	S	I	D	N	G	T	E	G	S	A	V	R	V	G	L	G	T	Q	F	S	F	T	K	N	F	S	A	Y	T	D	A	N	Y	L	G	.	.	G	G	D	V	D	Q	D	W	S	A	N	V
Query Conservation																						.	.	.																																												.	.
Alig confidence																						.	.	.																														.														.	.
Template Conservation																																																						.
Template Sequence		K	E	G	L	I	Y	K	V	F	A	G	V	E	R	R	E	V	D	K	N	Y	T	L	Q	G	K	T	L	Q	T	K	M	E	T	V	D	I	N	K	T	V	D	E	Y	R	V	G	A	T	I	G	Y	.	S	P	V	A	F	S	L	S	L	N	K	V	T	S	E	F	R	T	G	D	D	Y	S	Y	I	N	G
Template Known Secondary structure				S																						S		B	T	T	T							B		S														.	T	T													S	B	T	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		963	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	K	Y	T	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	T	F	F	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions