Job Description P77199 Confidence 12.99% Date Thu Jan 5 12:26:15 GMT 2012 Rank 54 Aligned Residues 176 % Identity 7% Template c3fhhA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane heme receptor shua; PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae Resolution 2.60 Å

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		770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.					.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		V	D	Q	D	S	Q	T	A	Y	I	Y	S	S	A	H	F	.	.	.	.	A	N	N	V	F	V	D	G	S	L	S	Y	S	H	F	N	N	D	L	S	A	T	M	S	N	G	T	Y	V	D	G	S	T	N	S	D	A	W	G	F	G	L	K	A	G	Y	D	F	K	L	G	D	A	G	Y	V	T	P	Y	G
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.
Template Conservation
Template Sequence		E	T	N	E	T	Q	E	Y	G	F	G	L	R	F	D	D	L	M	L	S	N	D	A	L	E	F	K	A	S	Y	F	D	T	K	A	K	D	Y	I	S	T	T	V	D	F	A	A	A	T	T	M	S	Y	N	V	P	N	A	K	I	W	G	W	D	V	M	T	K	Y	T	T	D	L	F	S	L	D	V	A	Y
Template Known Secondary structure																	S		T	T																										G	G	G	T																								S	S
Template Predicted Secondary structure
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
		846	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	S	G	L	F	Q	S	G	D	D	Y	Q	L	S	N	D	M	K	V	D	G	Q	S	Y	D	S	M	R	Y	E	L	G	V	D	A	G	Y	T	F	T	Y	S	E	D	Q	A	L	T	P	Y	F	K	L	A	Y	V	Y	D	D	S	N	N	D	N	D	V	N	G	D	S	I	D	N	G	T	E	G	S	A
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.																									.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.																									.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Sequence		N	R	T	R	G	K	D	T	D	T	.	.	.	.	.	.	.	.	.	.	G	E	Y	I	S	S	I	N	P	D	T	V	T	S	T	L	N	I	P	I	A	H	S	G	.	.	.	F	S	V	G	W	V	G	T	F	A	D	R	S	T	H	I	S	S	K	Q	.	.	.	.	.	.	.	.	.	.	P	G	Y
Template Known Secondary structure									T	T	T	.	.	.	.	.	.	.	.	.	.			B		S	S															T	T	S	S	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.																									.	.	.																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		528	.	530	.	.	.	.	.	.	.											.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.				.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.											.	.	.
		926	.	.	.	930	.	.	.	.	.	.	.				.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.								.	.	960	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																					.	.	.	.	.	.	.
Query SS confidence														.	.	.																					.	.	.	.	.	.	.
Query Sequence		V	R	V	G	L	G	T	Q	F	S	F	T	.	.	.	K	N	F	S	A	Y	T	D	A	N	Y	L	G	G	G	D	V	D	Q	D	.	.	.	.	.	.	.	W	S	A	N	V	G	V	K	Y	T	W
Query Conservation														.	.	.																					.	.	.	.	.	.	.
Alig confidence														.	.	.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	N	D	F	Y	V	S	Y	Q	G	Q	Q	A	L	K	G	M	T	T	T	L	V	L	G	N	A	F	D	K	E	Y	W	S	P	Q	G	I	P	Q	D	G	R	N	G	K	I	F	V	S	Y	Q	W
Template Known Secondary structure														G	G	G	T	T									S	T	T					B		T	T	S		B				S
Template Predicted Secondary structure
Template SS confidence
		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions