Job Description P77199 Confidence 97.05% Date Thu Jan 5 12:26:15 GMT 2012 Rank 23 Aligned Residues 200 % Identity 15% Template c3brzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		769	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.																															.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	V	D	Q	D	S	Q	T	A	Y	I	Y	S	S	A	H	F	A	N	N	V	F	V	D	G	S	L	S	Y	S	H	F	N	N	D	L	S	A	T	M	S	N	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	D	G	S	T
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	R	L	I	V	L	R	A	P	I	G	F	S	Y	Q	A	T	S	K	L	T	F	G	A	S	V	D	L	V	W	T	S	L	N	L	E	L	L	L	P	S	S	Q	V	G	A	L	T	A	Q	G	N	L	S	G	G	L	V	P	S	L	A	G	F	V	G	T	G	G	A	A	H	F	S	L	S	A	G	G
Template Known Secondary structure																		S	S	S	S																															T	T					S						T	T	T	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		819	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.														.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.		.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		N	S	D	A	W	G	F	G	L	K	A	G	Y	D	F	K	L	G	D	A	G	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	Y	G	S	V	S	G	L	F	Q	S	G	D	D	Y	Q	L	S	N	D	.	M	K	V	D	G	Q	S	Y	D	S	M	R	Y	E	L	G	V	D	A	G	Y	T
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		A	V	D	A	V	G	W	G	G	R	L	G	L	T	Y	K	L	T	D	N	T	V	L	G	A	M	Y	N	F	K	T	S	V	G	D	L	E	G	K	A	T	L	S	A	I	S	G	D	G	A	V	L	P	L	D	G	D	I	R	V	K	N	F	E	M	P	A	S	L	T	L	G	L	A	H	Q	F	N	E	R
Template Known Secondary structure		T	T																S	S	S											B																T	T	S																B												S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		885	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.					.	.	.	.	.	.	.	.	960
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		F	T	Y	S	E	D	Q	A	L	T	P	Y	F	K	L	A	Y	V	Y	D	D	S	N	N	D	N	D	V	N	G	D	S	I	D	N	G	T	E	G	S	A	V	R	V	G	L	G	T	Q	F	S	F	T	K	N	F	S	A	Y	T	D	A	N	Y	L	G	G	.	.	.	.	G	D	V	D	Q	D	W	S	A
Query Conservation																																																																					.	.	.	.
Alig confidence																																																																					.	.	.	.
Template Conservation
Template Sequence		W	V	V	A	A	D	I	K	R	A	Y	W	G	D	V	M	D	S	M	N	V	A	F	I	S	Q	L	G	G	I	D	V	A	L	P	H	R	Y	Q	D	I	T	V	A	S	I	G	T	A	Y	K	Y	N	N	D	L	T	L	R	A	G	Y	S	Y	A	Q	L	I	L	P	V	I	P	A	Y	L	K	R	H	V
Template Known Secondary structure														T	T			S									S	S																									S	S	S	S															T	T	S					S
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		961	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	G	V	K	Y	T	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	F	G	G	E	Y	D	F
Template Known Secondary structure									S
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions