Job Description P77199 Confidence 12.68% Date Thu Jan 5 12:26:15 GMT 2012 Rank 56 Aligned Residues 145 % Identity 13% Template c2y0hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable porin; PDBTitle: crystal structure of pseudomonas aeruginosa opdl Resolution 2.20 Å

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		824	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		G	F	G	L	K	A	G	Y	D	F	K	L	G	D	A	G	Y	V	T	P	Y	G	S	V	S	G	L	F	Q	S	G	D	D	Y	Q	L	S	N	D	M	K	V	D	G	Q	S	Y	D	S	M	R	Y	E	L	G	V	D	A	G	Y	T	F	T	Y	S	E	D	Q	A	L	T	P	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	H	Y	L	G	L	L	H	T	L	P	L	G	E	G	L	S	L	R	S	D	L	R	Y	F	D	S	G	E	D	G	A	A	I	S	G	P	V	D	N	R	N	L	N	A	M	L	T	L	R	A	G	A	H	A	F	G	I	G	V	Q	K	M	I	G	N	D	A	F	P	V	L	N	G	Y	T	T	P	Y	V
Template Known Secondary structure														S	T	T																T	T		T	T																	T	T												S	S	S					B	T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
																	896	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.												.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.					.	.	940	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	K	L	A	Y	V	Y	D	D	S	N	N	D	N	D	.	.	.	.	.	.	.	.	.	.	.	V	N	G	D	S	I	D	N	G	T	E	G	S	A	V	R	V	G	L	G	T	Q	F	S	F	T	.	.	.	.	K	N	F	S	A	Y	T	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Template Conservation
Template Sequence		A	N	L	M	A	Y	Q	T	F	T	R	P	Q	E	K	S	W	Q	L	R	Y	D	Y	D	F	A	G	L	G	L	P	G	L	N	L	M	T	R	Y	V	Q	G	R	D	I	D	R	G	A	G	R	A	D	D	S	E	W	E	R	N	T	D	L	S	Y	V	I	Q	S	G	P	L	K	S	V	A	L	K	W	R
Template Known Secondary structure		T	T			S	S			S		S	T	T													T	T	T	T		T	T																S	T	T																			S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		946	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	Y	L	G	G	G	D	V	D	Q	D	W	S	A	N	V	G	V	K	Y	T	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	I	T	Y	R	S	R	Y	G	A	D	L	D	E	N	R	F	I	V	N	Y	T	L
Template Known Secondary structure								S	S	S
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions