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Job DescriptionP77199
Confidence4.27%DateThu Jan 5 12:26:15 GMT 2012
Rank70Aligned Residues144
% Identity13%Templatec2odjA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   824.....830.........840.........850.........860.........870.........880.........890
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Query Sequence  GFGLKAGYDFKLGDAGYVTPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSED. . . . . . . . . . . . .
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Template Sequence  QYYLNSNYTIPLASDQSLGFDFNIYRTNDEGKAKAGDISNTTWSLAAAYTLDAHTFTLAYQKVHGDQPFDYIGFGSIFLA
Template Known Secondary structure  TT

TT
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TT

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SST
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   212.......220.........230.........240.........250.........260.........270.........280.........290.
 
   891........900.........910 .........920.........930.......
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Query Sequence  . . . . . . . . . QALTPYFKLAYVYDDSNNDN. . . . . . . . . . . . . . . . . . . . . . . DVNGDSIDNGTEGSAVRVGLGTQFSFT.
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Template Sequence  NSVQYSDFNGPGEKSWQARYDLNLASYGVPGLTFXVRYINGKDIDGTKXSDNNVGYKNYGYGEDGKHHETNLEAKYVVQS
Template Known Secondary structure  T

SS




TT

TTSSS
TT

TT

SS
TTTSSS


SS

S
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   301........310.........320.........330.........340.........350.........360.........370.........380
 
   938.940........ .950.........960.......
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Query Sequence  . . . KNFSAYTDANY. . . . . LGGGDVDQDWSANVGVKYT
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Template Sequence  GPAKDLSFRIRQAWHRANADQGEGDQNEFRLIVDYPLS
Template Known Secondary structure  STTTT

TTTSS
SB
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   381........390.........400.........410........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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