Job Description P77199 Confidence 99.25% Date Thu Jan 5 12:26:15 GMT 2012 Rank 8 Aligned Residues 169 % Identity 16% Template c2k0lA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Resolution UNK

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		785	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	N	N	V	F	V	D	G	S	L	S	Y	S	H	F	N	N	D	L	S	A	T	M	S	N	G	T	Y	V	D	G	S	T	N	S	D	A	W	G	F	G	L	K	A	G	Y	D	F	K	L	G	D	A	G	Y	V	T	P	Y	G	S	V	S	G	L	F	Q	S	G	D	D	Y	Q	L	S	N	D	M	K
Query Conservation
Alig confidence																					.																															.	.							.	.	.	.																.	.	.
Template Conservation																					.																															.	.							.	.	.	.																.	.	.
Template Sequence		K	D	N	T	W	Y	A	G	G	K	L	G	W	S	Q	Y	H	D	T	.	G	F	Y	G	N	G	F	Q	N	N	N	G	P	T	R	N	D	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	.	.	P	Y	L	G	F	E	.	.	.	.	M	G	Y	D	W	L	G	R	M	A	Y	K	G	S	V	.	.	.
Template Known Secondary structure															S					S	.						S				S				S																	.	.	T	T					.	.	.	.														S	S	.	.	.
Template Predicted Secondary structure																					.																															.	.							.	.	.	.																.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		865	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.			.	.	930	.	.	.	.	.	.	.	.	.	940	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence		V	D	G	Q	S	Y	D	S	M	R	Y	E	L	G	V	D	A	G	Y	T	F	T	Y	S	E	D	Q	A	L	T	P	Y	F	K	L	A	Y	V	Y	D	D	S	N	N	D	N	D	V	N	G	D	S	I	D	N	G	T	E	G	S	A	V	R	.	.	V	G	L	G	T	Q	F	S	F	T	K	N	F	S	A
Query Conservation																																																																	.	.
Alig confidence		.																				.	.	.	.																																								.	.
Template Conservation		.																				.	.	.	.
Template Sequence		.	D	N	G	A	F	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	.	.	.	.	I	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	S	K	G	N	Y	A	S	T	G	V	S	R	S	E	H	D	T	G	V	S	P	V	F	A	G	G	V	E	W	A	V	T	R	D	I	A	T
Template Known Secondary structure		.				S	S															.	.	.	.	S	S	S	S																			S				S	S	S																						S	S	S
Template Predicted Secondary structure		.																				.	.	.	.
Template SS confidence
			85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		943	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.								.	960	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.
Query Sequence		Y	T	D	A	N	Y	L	G	G	G	D	V	D	Q	D	W	.	.	.	.	.	.	.	S	A	N	V	G	V	K	Y	T	W
Query Conservation																		.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	E	Y	Q	W	V	N	N	I	G	D	A	G	T	V	G	T	R	P	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure						S	S		S	S					S					S	S		S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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