Job Description P77199 Confidence 99.07% Date Thu Jan 5 12:26:15 GMT 2012 Rank 12 Aligned Residues 145 % Identity 17% Template c2jmmA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Resolution UNK

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		786	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	N	V	F	V	D	G	S	L	S	Y	S	H	F	N	N	D	L	S	A	T	M	S	N	G	T	Y	V	D	G	S	T	N	S	D	A	W	G	F	G	L	K	A	G	Y	D	F	K	L	G	D	A	G	Y	V	T	P	Y	G	S	V	S	G	L	F	Q	S	G	D	D	Y	Q	L	S	N	D	M	K	V
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.								.	.	.	.										.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.								.	.	.	.										.	.	.	.	.	.	.	.	.	.
Template Sequence		D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	.	.	N	P	Y	V	G	F	E	.	.	.	.	M	G	Y	D	W	L	G	R	M	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S												T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S													.	.	S	S	S					.	.	.	.								S	S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.								.	.	.	.										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.																		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.					.	.	.	.	.	.	.	.	50
		866	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	Q	S	Y	D	S	M	R	Y	E	L	G	V	D	A	G	Y	T	F	T	Y	S	E	D	Q	A	L	T	P	Y	F	K	L	A	Y	V	Y	D	D	S	N	N	D	N	D	V	N	G	D	S	I	D	N	G	T	E	G	S	A	V	R	V	G	L	G	T	Q	F	S	F	T	K	N	F	S	A	Y	T	D
Query Conservation
Alig confidence		.	.	.																						.	.
Template Conservation		.	.	.																						.	.
Template Sequence		.	.	.	P	R	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	K	L	G	T	D	.	.	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	S	D	K	D	G	N	G	Y	I	S	A	A	E	A	S	V	S	P	V	F	A	G	G	V	E	Y	V	I	R	R	R	I	T	P	E	I	A
Template Known Secondary structure		.	.	.	S	S															T	T		T	T	.	.	T													S	S	B						S	S	S						B																S	S	S		S	S	S
Template Predicted Secondary structure		.	.	.																						.	.
Template SS confidence
					51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		946	.			.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		A	N	.	.	Y	L	G	G	G	D	V	D	Q	D	W	S	A	N	V	G	V	K	Y	T	W
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		T	R	L	E	Y	Q	W	T	N	N	A	S	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure										S	S	S	S													S
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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