Job Description P77199 Confidence 98.99% Date Thu Jan 5 12:26:15 GMT 2012 Rank 15 Aligned Residues 226 % Identity 17% Template c2iwvD_ PDB info PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation Resolution 2.3 Å

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		714	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.		.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.			.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790
Predicted Secondary structure																																					.																								.	.
Query SS confidence																																					.																								.	.
Query Sequence		Y	F	G	G	N	F	N	G	D	N	G	T	I	N	Y	D	Q	D	V	N	G	I	M	V	G	V	D	T	K	I	D	G	N	N	A	.	K	W	I	V	G	A	A	A	G	F	A	K	G	D	M	N	D	R	S	G	Q	V	D	.	.	Q	D	S	Q	T	A	Y	I	Y	S	S	A	H	F	A	N	N	V	F
Query Conservation																																					.																								.	.
Alig confidence																																					.																								.	.
Template Conservation
Template Sequence		A	Y	Y	Q	E	G	P	V	D	Y	S	A	G	K	R	G	T	W	F	D	R	P	E	L	E	V	H	Y	Q	F	L	E	N	D	D	F	S	F	G	L	T	G	G	F	R	N	Y	G	Y	H	Y	V	D	E	P	G	K	D	T	A	N	M	Q	R	W	K	I	A	P	D	W	D	V	K	L	T	D	D	L	R
Template Known Secondary structure											T	T	T	T				S																	S	S																	S	S		T	T																				S	S	S
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		791	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	G	S	L	S	Y	S	H	F	N	N	D	L	S	A	T	M	S	N	G	T	Y	V	D	G	S	T	N	S	D	A	W	G	F	G	L	K	A	G	Y	D	F	K	L	G	D	A	G	Y	V	T	P	Y	G	S	V	S	G	L	F	Q	S	G	D	D	Y	Q	L	S	N	D	M	K	V	D	G	Q	S	Y
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.							.	.																						.	.	.																			.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.							.	.																						.	.	.																			.	.	.	.
Template Sequence		F	N	G	W	L	S	M	Y	K	F	A	N	D	L	N	T	T	.	.	.	.	.	.	.	.	.	G	Y	A	D	T	R	.	.	V	E	T	E	T	G	L	Q	Y	T	F	N	E	T	V	A	L	R	V	N	Y	.	.	.	Y	L	E	R	G	F	N	M	D	D	S	R	N	N	G	E	F	S	.	.	.	.
Template Known Secondary structure													S						.	.	.	.	.	.	.	.	.				S			.	.												S	S	S	B							.	.	.								S	S	T	T			T	T				.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.							.	.																						.	.	.																			.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.										.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		871	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	M	R	Y	E	L	G	V	D	A	G	Y	T	F	T	Y	S	E	D	Q	A	L	T	P	Y	F	K	L	A	Y	V	Y	D	D	S	N	N	D	N	D	V	N	G	D	S	I	D	N	G	T	E	G	S	A	V	R	V	G	L	G	T	Q	F	S	F	T	K	N	F	S	A	Y	T	D	A	N	Y	L	G
Query Conservation
Alig confidence		.	.	.	.	.															.																		.	.	.	.	.
Template Conservation		.	.	.	.	.															.																		.	.	.	.	.
Template Sequence		.	.	.	.	.	T	Q	E	I	R	A	Y	L	P	L	T	L	G	N	.	H	S	V	T	P	Y	T	R	I	G	L	D	R	W	S	N	W	.	.	.	.	.	D	W	Q	D	D	I	E	R	E	G	H	D	F	N	R	V	G	L	F	Y	G	Y	D	F	Q	N	G	L	S	V	S	L	E	Y	A	F	E	W
Template Known Secondary structure		.	.	.	.	.													T	T	.																	T	.	.	.	.	.	T	T	T	T			S																		S	S	S
Template Predicted Secondary structure		.	.	.	.	.															.																		.	.	.	.	.
Template SS confidence
							190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220						.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
						951	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	G	G	D	V	D	Q	D	W	S	A	N	V	G	V	K	Y	T	W
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		Q	D	H	D	E	G	D	S	D	K	F	H	Y	A	G	V	G	V	N	Y	S	F
Template Known Secondary structure					S	S	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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