Return to main results Retrieve Phyre Job Id

Job DescriptionP0ABW0
Confidence99.97%DateThu Jan 5 11:16:30 GMT 2012
Rank2Aligned Residues101
% Identity45%Templatec2qpzA_
PDB info PDB header:metal binding proteinChain: A: PDB Molecule:naphthalene 1,2-dioxygenase system ferredoxin PDBTitle: naphthalene 1,2-dioxygenase rieske ferredoxin
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20. ........30.........40.........50.........60.........70.........
Predicted Secondary structure 







.




























Query SS confidence 




















.

























































Query Sequence  MNRIYACPVADVPEGEALRID. TSPVIALFNVGGEFYAINDRCSHGNASMSEGYLEDDATVECPLHAASFCLKTGKALCL
Query Conservation 
    

   

  
    
 .    
 
    
   
    


 
  
  
       
 

 

  


 

     
Alig confidence 




















.



































.




















Template Conservation    
  
    

  
        
  
 
 
  
   
    


 
  
  
     . 
 

 
   


  
     
Template Sequence  VKWIEAVALSDILEGDVLGVTVEGKELALYEVEGEIYATDNLCTHGSARMSDGYLEGR. EIECPLHQGRFDVCTGKALCA
Template Known Secondary structure 

TTS

TT
TTTTSB
SSSS
BGGGSTT.
TTTT
TTT

T
Template Predicted Secondary structure 






















.










Template SS confidence 















































































   2.......10.........20.........30.........40.........50......... 60.........70.........80
 
   80.........90.........100..
Predicted Secondary structure 










Query SS confidence 






















Query Sequence  PATDPLTTYPVHVEGGDIFIDLP
Query Conservation 
    
    
    
 
 
   
Alig confidence 






















Template Conservation 
    
    
 
  
 
 
 

Template Sequence  PVTQNIKTYPVKIENLRVMIDLS
Template Known Secondary structure  T

S



TT

Template Predicted Secondary structure 









Template SS confidence 






















   81........90.........100...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions