Job Description P0A6Z3 Confidence 99.76% Date Thu Jan 5 11:04:17 GMT 2012 Rank 29 Aligned Residues 230 % Identity 19% Template c3na3A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:dna mismatch repair protein mlh1; PDBTitle: mutl protein homolog 1 isoform 1 from homo sapiens Resolution 2.50 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	I	H	S	L	Y	S	N	K	E	I	F	L	R	E	L	I	S	N	A	S	D	A	A	D	K	L	R	F	R	A	L	S	N	P	D	L	Y	E	G	D	G	E	L	R	V	R	V	S	F	D	K	D	K	R	T	L	T	I	S	D	N	G	V	G	M	T	R	D	E	V	I	D	H	L	G	T	I	A
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		I	A	A	G	E	V	I	Q	R	P	A	N	A	I	K	E	M	I	E	N	C	L	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	T	S	I	Q	V	I	V	.	K	E	G	G	L	K	L	I	Q	I	Q	D	N	G	T	G	I	R	K	E	D	L	D	I	V	C	E	R	F	T
Template Known Secondary structure										S															T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S							.		G	G	G	T	S								S					G	G	G	G	G	T	T	T	S	T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	G	T	K	S	F	L	E	S	L	G	S	D	Q	A	K	D	S	Q	L	I	G	Q	F	G	V	G	F	Y	S	A	F	I	V	A	D	K	V	T	V	R	T	R	A	A	G	E	K	P	E	N	G	V	F	W	E	S	A	G	E	G	E	Y	T	V	A	D	I	T	K	E	D	R	G	T	E	I	T	L
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.	.
Template Sequence		T	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	S	F	G	F	R	G	E	A	L	A	S	I	S	H	V	A	.	H	V	T	I	T	T	K	T	A	D	G	.	.	K	C	A	Y	R	A	S	Y	S	D	G	K	L	K	A	P	P	K	P	C	A	G	N	Q	G	T	Q	I	T	V
Template Known Secondary structure			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T									S	S	.									T	T		.	.	S	S								T	T			S	S									S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.	.
Template SS confidence
		82	.	.																.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		179													180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		H	.	.	.	.	.	.	.	.	.	.	.	.	L	R	E	G	E	D	E	F	L	D	D	W	R	V	R	S	I	I	S	K	Y	S	D	H	I	A	.	L	P	V	E	I	E	K	R	E	E	K	D	G	E	T	V	I	S	W	E	K	I	N	K	A	Q	A	L	W	T	R	N	K	S	E	I	T	D	E	E
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.									.	.	.																.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	L	F	Y	N	I	A	T	R	R	K	A	L	K	N	P	S	E	E	Y	.	.	.	G	K	I	L	E	V	V	G	R	Y	S	V	H	N	A	G	I	S	F	S	V	K	K	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	V	A	D	V	R	T	L	P	N	A	S	T	V	D	N
Template Known Secondary structure			S	T	T	T	T							T	S								.	.	.															T	T								T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S		S					T	T
Template Predicted Secondary structure																							.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.															.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	E	F	Y	K	H	I	A	H	D	F	N	D	P	L	T	W	S	H	N	R	V	E	G	K	Q	E	Y	T	S	L	L	Y	I	P	S	Q	A	P	W	D	M	W	N	R	D	H	K	H	G	L	K	L	Y	V	Q	R	V	F	I	M	D	D
Query Conservation
Alig confidence																							.	.																	.	.	.	.	.	.	.
Template Conservation																							.	.																	.	.	.	.	.	.	.
Template Sequence		I	R	S	I	F	G	N	A	V	S	R	E	L	I	E	I	G	C	E	D	K	.	.	T	L	A	F	K	M	N	G	Y	I	S	N	A	N	Y	S	.	.	.	.	.	.	.	V	K	K	C	I	F	L	L	F	I	N	H	R	L	V	E	S	T
Template Known Secondary structure												T	T									G	.	.	G	G	T										S	S			.	.	.	.	.	.	.	B	S	S								T	T						T
Template Predicted Secondary structure																							.	.																	.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.								.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions