Phyre 2 alignment of P0A6Z3 with c3h4lB

Job Description P0A6Z3
Confidence 99.77% Date Thu Jan 5 11:04:17 GMT 2012

Rank 28 Aligned Residues 297

% Identity 16% Template c3h4lB_

PDB info PDB header:dna binding protein, protein binding Chain: B: PDB Molecule:dna mismatch repair protein pms1; PDBTitle: crystal structure of n terminal domain of a dna repair protein

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	H	L	M	I	H	S	L	Y	S	N	K	E	I	F	L	R	E	L	I	S	N	A	S	D	A	A	D	K	L	R	F	R	A	L	S	N	P	D	L	Y	E	G	D	G	E	L	R	V	R	V	S	F	D	K	D	K	R	T	L	T	I	S	D	N	G	V	G	M	T	R	D	E	V	I	D	H	L	G	T	I
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence	R	I	T	S	G	Q	V	I	T	D	L	T	T	A	V	K	E	L	V	D	N	S	I	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	N	Q	I	E	I	I	F	K	D	Y	G	L	E	.	S	I	E	C	S	D	N	G	D	G	I	D	P	S	N	Y	E	F	L	A	L	K	H
Template Known Secondary structure										S															T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S								G	G	G	T	S	.								S					T	T	T	G	G	G	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
	45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.																	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.

	98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	K	S	G	T	K	S	F	L	E	S	L	G	S	D	Q	A	K	D	S	Q	L	I	G	Q	F	G	V	G	F	Y	S	A	F	I	V	A	D	K	V	T	V	R	T	R	A	A	G	E	K	P	E	N	G	V	F	W	E	S	A	G	E	G	E	Y	T	V	A	D	I	T	K	E	D	R	G	T	E	I	T
Query Conservation
Alig confidence				.	.	.	.	.	.																														.											.	.	.
Template Conservation				.	.	.	.	.	.																														.											.	.	.
Template Sequence	Y	T	S	.	.	.	.	.	.	K	I	A	K	F	Q	D	V	A	K	V	Q	T	L	G	F	R	G	E	A	L	S	S	L	C	G	I	A	K	.	L	S	V	I	T	T	T	S	P	P	.	.	.	K	A	D	K	L	E	Y	D	M	V	G	H	I	T	S	K	T	T	T	S	R	N	K	G	T	T	V	L
Template Known Secondary structure				.	.	.	.	.	.			T	T	S	S						T	T	S	S			S	S								S	S		.							S	S	T	T	.	.	.									T	T	S											S	S
Template Predicted Secondary structure				.	.	.	.	.	.																														.											.	.	.
Template SS confidence
	108	.	110							.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.				150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

	178	.														180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence	L	H	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	E	G	E	D	E	F	L	D	D	W	R	V	R	S	I	I	S	K	Y	S	D	H	.	I	A	L	P	V	E	I	E	K	R	E	E	K	D	G	E	T	V	I	S	W	E	K	I	N	K	A	Q	A	L	W	T	R	N	K	S	E	I	T	D
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.														.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	S	Q	L	F	H	N	L	P	V	R	Q	K	E	F	S	K	T	F	K	R	Q	F	.	.	.	T	K	C	L	T	V	I	Q	G	Y	A	I	I	N	A	A	I	K	F	S	V	W	N	I	T	.	.	.	.	.	.	.	.	.	.	.	P	K	G	K	K	N	L	I	L	S	T	M	R	N	S	S	M	R
Template Known Secondary structure			S	T	T	T	T										T	T						.	.	.															T	T	S									.	.	.	.	.	.	.	.	.	.	.	T	T	S										T	T
Template Predicted Secondary structure																								.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.												.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

	244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.											.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																																															.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.																																															.
Query Sequence	E	E	Y	K	E	F	Y	K	H	I	A	H	D	F	N	D	P	L	T	W	S	.	.	.	.	.	.	.	.	.	.	H	N	R	V	E	G	K	Q	E	Y	T	S	L	L	Y	I	P	S	Q	A	P	W	D	M	W	N	R	D	H	K	H	G	L	K	L	Y	V	Q	R	V	F	I	M	D	D	A	.	E	Q
Query Conservation																						.	.	.	.	.	.	.	.	.	.																																															.
Alig confidence																						.	.	.	.	.	.	.	.	.	.																					.	.	.	.																							.
Template Conservation																																																				.	.	.	.
Template Sequence	K	N	I	S	S	V	F	G	A	G	G	M	R	G	L	E	E	V	D	L	V	L	D	L	N	P	F	K	N	R	M	L	L	D	L	D	Y	K	I	R	V	K	G	Y	I	S	Q	N	S	F	G	.	.	.	.	C	G	R	N	S	K	D	R	Q	F	I	Y	V	N	K	R	P	V	E	Y	S	T	L	L	K
Template Known Secondary structure								T	G	G	G	T	T	T											G	G	G			S																		S	S	T	T	.	.	.	.	S	S	B	S	S	T	T	S						S	S	S	B
Template Predicted Secondary structure																																																				.	.	.	.
Template SS confidence
	244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.					.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

	313	.	.	.	.											.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.
Query Sequence	F	M	P	N	Y	.	.	.	.	.	.	.	.	.	.	L	R	F	V	R	G	L	I	D	S	S	D	L	P	L	N	V	S	R	E	I	L	Q	D	S	T	V	T	R	N	L	R	N	A	L	T	K	R	V	L	Q	M	L	E	K
Query Conservation						.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.																	.										.	.
Template Conservation																																.										.	.
Template Sequence	C	C	N	E	V	Y	K	T	F	N	N	V	Q	F	P	A	V	F	L	N	L	E	L	P	M	S	L	I	D	P	D	.	K	R	V	I	L	L	H	N	E	.	.	R	A	V	I	D	I	F	K	T	T	L	S	D	Y	Y	N	R
Template Known Secondary structure								T	T		T	T		B											G	G	G	B				.	S					B	T	T		.	.
Template Predicted Secondary structure																																.										.	.
Template SS confidence
	329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.			.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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