Job Description P0A6Z3 Confidence 99.76% Date Thu Jan 5 11:04:17 GMT 2012 Rank 30 Aligned Residues 151 % Identity 23% Template c2zbkB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms Resolution 3.56 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		I	H	S	L	Y	S	N	K	E	I	F	L	R	E	L	I	S	N	A	S	D	A	A	D	K	L	R	F	R	A	L	S	N	P	D	L	Y	E	G	D	G	E	L	R	V	R	V	S	F	D	K	D	K	R	.	.	.	T	L	T	I	S	D	N	G	V	G	M	T	R	D	E	V	I	D	H	L	G	T	I
Query Conservation																																																								.	.	.
Alig confidence								.	.	.	.														.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation								.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	A	L	Y	Q	.	.	.	.	T	V	R	E	L	I	E	N	S	L	D	A	T	.	.	.	.	.	.	.	.	.	.	.	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G	I	G	I	P	P	Q	E	V	P	N	A	F	G	R	V
Template Known Secondary structure								.	.	.	.											T	T	T	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T														T	T	T	T										S					G	G	G	S					T	S
Template Predicted Secondary structure								.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.					.	.	.	.	.	40	.	.	.	.	.	.	.												.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.						.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.									160	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.																																	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.																																	.	.	.	.	.	.	.	.
Query Sequence		A	K	S	G	T	K	S	F	L	E	S	L	G	S	D	Q	A	K	D	S	Q	L	I	G	Q	F	G	V	G	F	.	.	.	.	.	Y	S	A	F	I	V	A	D	K	V	T	V	R	T	R	A	A	G	E	K	P	E	N	G	V	F	W	E	S	A	G	E	.	.	.	.	.	.	.	.	G	E	Y	T	V
Query Conservation																																.	.	.	.	.																																	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.																				.	.												.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.																																							.	.
Template Sequence		L	Y	S	S	K	.	.	.	.	.	.	.	.	.	.	.	Y	V	N	R	Q	T	R	G	M	Y	G	L	G	V	K	A	A	V	L	Y	S	Q	M	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	.	.	K	R	I	Y	T	F	K	L	K	I	D	I	N	K	N	E	P	I	I	V	E	R	G	S
Template Known Secondary structure				S			.	.	.	.	.	.	.	.	.	.	.				S			S		S	S	S	S																								T	T		.	.	S											T	T	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.																																							.	.
Template SS confidence
		94	.	.	.	.												.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	I	T	K	E	D	R	G	T	E	I	T	L	H	L	R	E	G	E	D	E	F	L	D	D	W	R	V	R	S	I	I	S	K	Y	S
Query Conservation
Alig confidence																								.	.
Template Conservation																								.	.
Template Sequence		V	E	N	T	R	G	F	H	G	T	S	V	A	I	S	I	P	G	D	W	P	K	.	.	A	K	S	R	I	Y	E	Y	I	K	R	T	Y
Template Known Secondary structure						S	S																	.	.
Template Predicted Secondary structure																								.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions