Job Description P0A6Z3 Confidence 99.85% Date Thu Jan 5 11:04:17 GMT 2012 Rank 27 Aligned Residues 171 % Identity 18% Template c2q2eB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of the topoisomerase vi holoenzyme from2 methanosarcina mazei Resolution 4.00 Å

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		8	.	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.
Predicted Secondary structure												.	.																																																										.	.	.
Query SS confidence												.	.																																																										.	.	.
Query Sequence		G	F	Q	S	E	V	K	Q	L	L	.	.	H	L	M	I	H	S	L	Y	S	N	K	E	I	F	L	R	E	L	I	S	N	A	S	D	A	A	D	K	L	R	F	R	A	L	S	N	P	D	L	Y	E	G	D	G	E	L	R	V	R	V	S	F	D	K	D	K	R	.	.	.	T	L	T	I	S	D	N	G
Query Conservation												.	.																																																										.	.	.
Alig confidence												.	.										.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation																							.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	F	F	E	K	N	R	Q	I	L	G	F	D	S	A	P	R	S	L	I	T	.	.	.	.	T	V	K	E	A	V	D	N	A	L	D	A	C	E	E	A	G	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	I	L	V	Q	V	E	R	T	G	P	D	Y	V	T	V	I	I	E	D	N	G
Template Known Secondary structure							S	T	T	T	S	S		S	S								.	.	.	.														T	T	T	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	T										S
Template Predicted Secondary structure																							.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.														60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		V	G	M	T	R	D	E	V	I	D	H	L	G	T	I	A	K	S	G	T	K	S	F	L	E	S	L	G	S	D	Q	A	K	D	S	Q	L	I	G	Q	F	G	V	G	F	Y	S	A	F	I	V	A	D	K	V	T	V	R	T	R	A	A	G	E	K	P	E	N	G	V	F	W	E	S	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.																																					.	.									.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.																																					.	.
Template Sequence		P	G	I	V	R	E	Q	I	P	K	V	F	A	K	L	L	Y	G	F	H	.	.	.	.	.	.	.	.	A	L	K	S	R	G	Q	Q	G	I	G	I	S	A	A	V	L	Y	A	Q	M	T	A	G	R	H	T	K	I	L	S	K	T	S	P	T	.	.	A	P	A	H	Y	Y	E	L	M	I	N	T	S	T
Template Known Secondary structure						G	G	G						S								.	.	.	.	.	.	.	.						S	S	S	S														T											S	S	S	.	.	S											S	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.																																					.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.									.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.
			157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	G	E	G	E	Y	T	V	A	D	I	T	K	E	D	R	G	T	E	I	T	L	H	L	R	E	G	E	D	E	F	L	D	D	W	R	V	R	S	I	I	S	K	Y	S	D	H	I	A	L
Query Conservation		.
Alig confidence		.																																				.
Template Conservation																																						.
Template Sequence		N	E	P	D	I	L	V	D	E	V	R	D	W	F	R	P	H	G	T	Q	I	E	L	E	M	R	A	A	Y	V	K	G	R	R	Q	S	.	I	Y	E	Y	L	K	A	T	A	I	V	N	P	H
Template Known Secondary structure			S												S		S	S									S							S	S	S	S	.	S													S
Template Predicted Secondary structure																																						.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions