Job Description P0A6Z3 Confidence 19.93% Date Thu Jan 5 11:04:17 GMT 2012 Rank 90 Aligned Residues 159 % Identity 14% Template c1toaA_ PDB info PDB header:binding protein Chain: A: PDB Molecule:protein (periplasmic binding protein troa); PDBTitle: periplasmic zinc binding protein troa from treponema pallidum Resolution 1.80 Å

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		353	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.					400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure										.																																								.	.	.	.
Query SS confidence										.																																								.	.	.	.
Query Sequence		T	K	R	V	L	Q	M	L	.	E	K	L	A	K	D	D	A	E	K	Y	Q	T	F	W	Q	Q	F	G	L	V	L	K	E	G	P	A	E	D	F	A	N	Q	E	A	I	A	K	L	.	.	.	.	L	R	F	A	S	T	H	T	D	S	S	A	Q	T	V	S	L	E	D	Y	V	S	R	M	K	E	G	Q
Query Conservation										.																																								.	.	.	.
Alig confidence										.																																								.	.	.	.									.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.
Template Sequence		W	S	Y	S	V	K	A	V	Y	E	S	L	C	K	L	L	P	G	K	T	R	E	F	T	Q	R	Y	Q	A	Y	Q	Q	Q	L	D	K	L	D	A	Y	V	R	R	K	A	Q	S	L	P	A	E	R	R	V	L	V	T	A	H	D	.	.	.	.	.	.	.	A	F	G	Y	F	S	R	A	Y	G	F	E	V
Template Known Secondary structure																		G	G	G																												T	S		G	G	G								S	.	.	.	.	.	.	.										T
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200								.	.	.	.	.	.	.	.	.	210	.	.	.
		428	.	430	.	.	.	.	.				.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		E	K	I	Y	Y	I	T	A	.	.	.	D	S	Y	A	A	A	K	S	S	P	H	L	E	L	L	R	K	K	G	I	E	V	L	L	L	S	D	R	I	D	E	W	M	M	N	Y	L	T	E	F	D	G	K	P	F	Q	S	V	S	K	V	D	E	S	L	E	K	L	A	D	E	V	D	E	S	A	K	E	A
Query Conservation										.	.	.
Alig confidence										.	.	.								.	.
Template Conservation																				.	.
Template Sequence		K	G	L	Q	G	V	S	T	A	S	E	A	S	A	H	D	M	Q	.	.	E	L	A	A	F	I	A	Q	R	K	L	P	A	I	F	I	E	S	S	I	P	H	K	N	V	E	A	L	R	D	A	V	Q	A	R	G	H	V	V	Q	I	G	G	E	L	F	S	D	A	M	G	D	A	G	T	S	E	G	T	Y
Template Known Secondary structure							S	S		S	S									.	.									T	T		S						T	T	S		T												T	T	T											S	S	S				T	T	S	G	G	G	S
Template Predicted Secondary structure																				.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	A	L	T	P	F	I	D	R	V	K	A	L	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	M	V	T	H	N	I	D	T	I	V	A	A	L	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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