Job Description P0A6Z3 Confidence 99.72% Date Thu Jan 5 11:04:17 GMT 2012 Rank 33 Aligned Residues 171 % Identity 20% Template c1mx0D_ PDB info PDB header:isomerase Chain: D: PDB Molecule:type ii dna topoisomerase vi subunit b; PDBTitle: structure of topoisomerase subunit Resolution 2.30 Å

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		8	.	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.
Predicted Secondary structure												.	.																																																										.	.	.
Query SS confidence												.	.																																																										.	.	.
Query Sequence		G	F	Q	S	E	V	K	Q	L	L	.	.	H	L	M	I	H	S	L	Y	S	N	K	E	I	F	L	R	E	L	I	S	N	A	S	D	A	A	D	K	L	R	F	R	A	L	S	N	P	D	L	Y	E	G	D	G	E	L	R	V	R	V	S	F	D	K	D	K	R	.	.	.	T	L	T	I	S	D	N	G
Query Conservation												.	.																																																										.	.	.
Alig confidence												.	.										.	.	.	.														.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																							.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	F	F	K	R	N	P	E	L	A	G	F	P	N	P	A	R	A	L	Y	Q	.	.	.	.	T	V	R	E	L	I	E	N	S	L	D	A	T	.	.	.	.	.	.	.	.	.	.	.	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G
Template Known Secondary structure								G	G	G	G	T		S	S								.	.	.	.												T	T	.	.	.	.	.	.	.	.	.	.	.	G	G	G	T														T	T	T	T										S
Template Predicted Secondary structure																							.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.					.	.	.	.	.	40	.	.	.	.	.	.	.												.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		V	G	M	T	R	D	E	V	I	D	H	L	G	T	I	A	K	S	G	T	K	S	F	L	E	S	L	G	S	D	Q	A	K	D	S	Q	L	I	G	Q	F	G	V	G	F	Y	S	A	F	I	V	A	D	K	V	T	V	R	T	R	A	A	G	E	K	P	E	N	G	V	F	W	E	S	A	G	E	G	.	.
Query Conservation																																																																																.	.
Alig confidence																						.	.	.	.	.	.																																																					.	.
Template Conservation																						.	.	.	.	.	.
Template Sequence		I	G	I	P	P	Q	E	V	P	N	A	F	G	R	V	L	Y	S	S	K	.	.	.	.	.	.	Y	V	N	R	Q	T	R	G	X	Y	G	L	G	V	K	A	A	V	L	Y	S	Q	X	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	K	R	I	Y	T	F	K	L	K	I	D	I	N	K	N	E
Template Known Secondary structure						G	G	G							S	S	S			S		.	.	.	.	.	.		S	S	S			S			S	S																									T	T		S											T	T	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
						161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	E	Y	T	V	A	D	I	T	K	E	D	R	G	T	E	I	T	L	H	L	R	E	G	E	D	E	F	L	D	D	W	R	V	R	S	I	I	S	K	Y	S
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																													.	.
Template Conservation																																		.	.
Template Sequence		P	I	I	V	E	R	G	S	V	E	N	T	R	G	F	H	G	T	S	V	A	I	S	I	P	G	D	W	P	K	A	K	.	.	S	R	I	Y	E	Y	I	K	R	T	Y
Template Known Secondary structure														S																				.	.
Template Predicted Secondary structure																																		.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions