Job Description P0A6Z3 Confidence 99.42% Date Thu Jan 5 11:04:17 GMT 2012 Rank 42 Aligned Residues 293 % Identity 15% Template c1ei1B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna gyrase b; PDBTitle: dimerization of e. coli dna gyrase b provides a structural mechanism2 for activating the atpase catalytic center Resolution 2.30 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.									90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.
Query Sequence		L	R	E	L	I	S	N	A	S	D	A	A	D	K	L	R	F	R	A	L	S	N	P	D	L	Y	E	G	D	G	E	L	R	V	R	V	S	F	D	K	D	K	R	T	L	T	I	S	D	N	G	V	G	M	T	R	D	E	.	.	.	.	.	.	.	.	V	I	D	H	L	G	T	I	A	K	S	G	T	K
Query Conservation																																																												.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																.	.	.	.	.	.	.	.														.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																					.
Template Sequence		V	F	E	V	V	D	N	A	I	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	A	G	H	C	K	E	I	I	V	T	I	H	A	D	N	.	S	V	S	V	Q	D	D	G	R	G	I	P	T	G	I	H	P	E	E	G	V	S	A	A	E	V	I	M	T	V	L	H	A	G	G	K	.
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T											T	T	S	.								S	S					S	B		T	T	T	S	S	B								S	T	T		S	S		.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																					.
Template SS confidence
		440	.	.	.	.	.	.	.	.	.	450															.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.		.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	L	E	S	L	G	S	D	Q	A	K	D	S	Q	L	I	G	Q	F	G	V	G	F	Y	S	A	F	I	V	A	D	K	V	T	V	R	T	R	A	A	G	E	K	P	E	N	G	V	F	W	E	S	A	G	E	G	E	Y	T	V	A	D	I	T	K	E	D	R	G	T	E	I	T	L	H	L	R	E	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																					.	.																														.	.
Template Conservation		.	.	.	.	.	.	.																																					.	.																														.	.
Template Sequence		.	.	.	.	.	.	.	F	D	D	N	S	Y	K	V	S	G	G	L	H	G	V	G	V	S	V	V	N	A	L	S	Q	K	L	E	L	V	I	Q	R	E	G	K	.	.	I	H	R	Q	I	Y	E	H	G	V	P	Q	A	P	L	A	V	T	G	E	T	E	K	T	G	T	M	V	R	.	.	F	W	P	S
Template Known Secondary structure		.	.	.	.	.	.	.	S	S	S	S	S		S	S		S			S	S									T											T	T		.	.								T	T			S	S									S								.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																																					.	.																														.	.
Template SS confidence
									504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.			540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.			.	570	.	.
		184	.	.	.						.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.
Query SS confidence						.	.	.	.	.
Query Sequence		E	D	E	F	.	.	.	.	.	L	D	D	W	R	V	R	S	I	I	S	K	Y	S	D	H	I	A	L	P	V	E	I	E	K	R	E	E	K	D	G	E	T	V	I	S	W	E	K	I	N	K	A	Q	A	L	W	T	R	N	K	S	E	I	T	D	E	E	Y	K	E	F	Y	K	H	I	A	H	D	F	N
Query Conservation						.	.	.	.	.
Alig confidence						.	.	.	.	.															.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	T	F	T	N	V	T	E	F	E	Y	E	I	L	A	K	R	L	R	E	L	S	.	F	L	D	S	G	V	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	R	D	K	R	D	G	K	E	D	H	F	H	Y	E	G	G	I	K	A	F	V	E	Y	L	N	K	N	K	T	P	I	H
Template Known Secondary structure		T	T	T			S			S															.			S	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T										S										T	T	T	S		B	S
Template Predicted Secondary structure																									.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.		.	.	.	.	600	.	.	.															.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	P	L	T	W	S	H	N	R	V	E	G	K	Q	E	Y	T	S	L	L	Y	I	P	S	Q	A	P	W	D	M	W	N	R	D	H	K	H	G	L	K	L	Y	V	Q	R	V	F	I	M	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.
Template Sequence		P	N	I	F	Y	F	S	T	E	K	D	G	I	G	V	E	V	A	L	Q	W	N	D	G	.	.	.	.	.	.	.	.	.	.	F	Q	E	N	I	Y	C	F	T	N	N	I	P	Q	R	D	G	G	T	H	L	A	G	F	R	A	A	M	T	R	T	L	N	A	Y	M	D	K	E	G	Y	S	K	K	A	K
Template Known Secondary structure		S	S									T	T										B	S	S	.	.	.	.	.	.	.	.	.	.										T	T				T	T		B																					T	T						T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		638	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.											.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
					309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	D	A	E	Q	F	M	P	N	Y	L	R	F	V	R	G	L	I	D	S	S	D	L	P	L	N	V	S	R	E	I	L	Q	D	S	T	V	T	R	N	L	R	N	A	L	T	K	R	V	L	Q	M	L	E	K	L	A	K	D	D	A	E	K	Y	Q	T	F	W	Q	Q
Query Conservation		.	.	.
Alig confidence		.	.	.																							.
Template Conservation																											.
Template Sequence		V	S	A	T	G	D	D	A	R	E	G	L	I	A	V	V	S	V	K	V	P	D	P	K	F	.	S	S	Q	T	K	D	K	L	V	S	S	E	V	K	S	A	V	E	Q	Q	M	N	E	L	L	A	E	Y	L	L	E	N	P	T	D	A	K	I	V	V	G	K	I	I	D	A
Template Known Secondary structure											T	T										S	S			B	.	S	S	T	T			S	B
Template Predicted Secondary structure																											.
Template SS confidence
		708	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.		.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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