Job Description P0A6Z3 Confidence 99.54% Date Thu Jan 5 11:04:17 GMT 2012 Rank 36 Aligned Residues 262 % Identity 18% Template c1ea6A_ PDB info PDB header:dna repair Chain: A: PDB Molecule:pms1 protein homolog 2; PDBTitle: n-terminal 40kda fragment of nhpms2 complexed with adp Resolution 2.7 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	K	E	I	F	L	R	E	L	I	S	N	A	S	D	A	A	D	K	L	R	F	R	A	L	S	N	P	D	L	Y	E	G	D	G	E	L	R	V	R	V	S	F	D	K	D	K	R	T	L	T	I	S	D	N	G	V	G	M	T	R	D	E	V	I	D	H	L	G	T	I	A	K	S	G	T	K	S	F
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	L	S	T	A	V	K	E	L	V	E	N	S	L	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	T	N	I	D	L	K	L	.	K	D	Y	G	V	D	L	I	E	V	S	D	N	G	C	G	V	E	E	E	N	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S															T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S							.		T	T	T	T	S								S					T	T	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.																	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		L	E	S	L	G	S	D	Q	A	K	D	S	Q	L	I	G	Q	F	G	V	G	F	Y	S	A	F	I	V	A	D	K	V	T	V	R	T	R	A	A	G	E	K	P	E	N	G	V	F	W	E	S	A	G	E	G	E	Y	T	V	A	D	I	T	K	E	D	R	G	T	E	I	T	L	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.												.	.																															.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.												.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	T	L	E	A	L	S	S	L	C	A	L	S	.	D	V	T	I	S	T	C	H	A	S	A	.	.	K	V	G	T	R	L	M	F	D	H	N	G	K	I	I	Q	K	T	P	Y	P	R	P	R	G	T	T	V	S	V	Q	Q	L	F	S	T	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T											S	.									T	T		.	.	S	S								T	T	S												S								S	T	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.												.	.
Template SS confidence
																	82	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
								179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure		.	.	.	.	.	.																										.
Query SS confidence		.	.	.	.	.	.																										.
Query Sequence		.	.	.	.	.	.	H	L	R	E	G	E	D	E	F	L	D	D	W	R	V	R	S	I	I	S	K	Y	S	D	H	.	I	A	L	P	V	E	I	E	K	R	E	E	K	D	G	E	T	V	I	S	W	E	K	I	N	K	A	Q	A	L	W	T	R	N	K	S	E	I	T	D	E	E	Y	K	E	F	Y	K
Query Conservation		.	.	.	.	.	.																										.
Alig confidence		.	.	.	.	.	.										.	.	.														.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	R	H	K	E	F	Q	R	N	I	K	K	E	Y	.	.	.	A	K	M	V	Q	V	L	H	A	Y	C	I	I	S	A	G	I	R	V	S	C	T	N	Q	L	.	.	.	.	.	.	.	.	.	.	.	G	Q	G	K	R	Q	P	V	V	C	T	G	G	S	P	S	I	K	E	N	I	G	S	V	F	G
Template Known Secondary structure																	.	.	.															T	T										.	.	.	.	.	.	.	.	.	.	.	T	T	S												S	S
Template Predicted Secondary structure																	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.												.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.															.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.
Query Sequence		H	I	A	H	D	F	N	D	P	L	T	W	S	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	V	E	G	K	Q	E	Y	T	S	L	L	Y	I	P	S	Q	A	P	W	D	M	W	N	R	D	H	K	H	G	L	K	L	Y	V	Q	R	V	F	I	M	D	D	A	.	.	E	Q	F	M	P
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.																							.	.
Template Conservation																																																	.	.	.	.
Template Sequence		Q	K	Q	L	Q	S	L	I	P	F	V	Q	L	P	P	S	D	S	V	C	E	E	Y	G	L	S	C	S	D	A	L	H	N	L	F	Y	I	S	G	F	I	S	Q	C	T	H	G	.	.	.	.	V	G	R	S	S	T	D	R	Q	F	F	F	I	N	R	R	P	C	D	P	A	K	V	C	R	L	V	N	E
Template Known Secondary structure							T																		T							S	S												S	S	T	T	.	.	.	.	T	S	B	S	S	S	T	T						T	T
Template Predicted Secondary structure																																																	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.					280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.				340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		N	Y	L	R	F	V	R	G	L	I	D	S	S	D	L	P	L	N	V	S	R	E	I	L	.	.	.	Q	D	S	T	V	T	R	N	L	R	N	A	L	T	K
Query Conservation																										.	.	.
Alig confidence																										.	.	.
Template Conservation
Template Sequence		V	Y	H	M	Y	N	R	H	Q	Y	P	F	V	V	L	N	I	S	V	D	S	E	C	V	L	L	Q	E	E	K	L	L	L	A	V	L	K	T	S	L	I	G
Template Known Secondary structure								T	T		B											G	G	G				S	S
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions