Return to main results Retrieve Phyre Job Id

Job DescriptionP52062
Confidence41.74%DateThu Jan 5 12:05:07 GMT 2012
Rank385Aligned Residues141
% Identity9%Templatec3fkkA_
PDB info PDB header:lyaseChain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase; PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60...... ...70.........80.........90.........100.........110.......
Predicted Secondary structure 






..





















Query SS confidence 


























. .


















































Query Sequence  VQHLLNDLDNDVAYAQGREVKTIFIGG. . GTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANPGTVEADRFVDYQRAG
Query Conservation     
  

           
  
  

..


  
    
  
   
              
     
    
  
   
Alig confidence 














....







..


















































Template Conservation         
  
   
....
 

   




   

  

  
          
 





   
    
  
  
   
Template Sequence  LASQKRAVDFMIDAG. . . . SDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLG
Template Known Secondary structure  TT....
S
SSGGGTGGGS
TTSS



S
TT
Template Predicted Secondary structure 

....




















Template SS confidence 















































































   3940.........50... ......60.........70.........80.........90.........100.........110....
 
   118.120.........130.........140.........150.........160.........170.........180.........190...
Predicted Secondary structure 































Query SS confidence 











































































Query Sequence  VNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFNLDLMHGLPDQSLEEALGDLRQAIELNPPHLSW
Query Conservation     






     
  
 
          
  
   
   
  


 





 
     
     
    
  
Alig confidence 











......
























...





























Template Conservation 
 

 
 

 
 ......     
   
      

 
   

...



 
                  
 



Template Sequence  AAMVMAMPPYHG. . . . . . ATFRVPEAQIFEFYARVSDAIAIPI. . . MVQDAPASGTALSAPFLARMAREIEQVAYF
Template Known Secondary structure 
S

S
BT......TTB



SS
...
GGG




STT
Template Predicted Secondary structure 






......









...











Template SS confidence 











































































   115....120...... ...130.........140.........150. ........160.........170.........180.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions