 |
Job Description | P52062 | Confidence | 49.18% | Date | Thu Jan 5 12:05:07 GMT 2012 |
Rank | 340 | Aligned Residues | 67 |
% Identity | 19% | Template | c2z1kA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:(neo)pullulanase; |
PDBTitle: crystal structure of ttha1563 from thermus thermophilus hb8
|
Resolution | 2.30 Å |
|
 |
  |   |
108 | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | R | F | V | D | Y | Q | R | A | G | V | N | R | I | S | I | G | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | S | F | S | E | E | K | L | K | R | L | G | R | I | H | G | P | Q | E | A | K | R | A | A | K | L | A | S | G | L | G | L | R | S | F | N | L | D | L | M | H | G | L | P | D | Q | S |
Query Conservation |   |
  |   |
|   |   |
|   |   |   |
|   |   |   |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |
|
|
|   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|   |   |
|
|   |   |   |
|   |
|   |
|
|   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|
|   |   |
| . | . | . | . | . | . | . |
|
|   |   |
|   |
|   |
|
|   |   |
|
|   |   |
|
|   | . |
|
|
|
|   |
|   |
|
|   |
|   |   |
Template Sequence |   |
E | K | L | P | Y | L | L | D | L | G | V | E | A | I | Y | L | N | P | V | F | A | S | T | A | N | H | R | Y | H | T | V | D | Y | F | Q | V | D | P | I | L | . |
. |
. |
. |
. |
. |
. |
G | G | N | E | A | L | R | H | L | L | E | V | A | H | A | H | G | V | R | . |
V | I | L | D | G | V | F | N | H | T | G | R | G |
Template Known Secondary structure |   |
 | T |  |  |  |  |  |  |  | T |
|
|  |  |  |  |
|
|
|  |  |  | S | S | T | T |
|
| S |  |  |  |  |  |  |  |
| G | G | G | . | . | . | . | . | . | . | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  | . |  |  |  |  |  |
|
| S | B |
|
| T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . |  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
54 | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | |
. | . | . | . | . | . | . | 120 | . | . | . | . | . |
  |
  |   |
173 | . | . | . | . | . | . | 180 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | E | E | A | L | G | D | L | R | Q |
Query Conservation |   |
  |
|   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
F | F | A | F | Q | H | L | X | E | N |
Template Known Secondary structure |   |
S |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
  |   |
126 | . | . | . | 130 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|