Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 47 Aligned Residues 349 % Identity 20% Template c3tj4B_ PDB info PDB header:lyase Chain: B: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of an enolase from agrobacterium tumefaciens (efi2 target efi-502087) no mg Resolution 1.50 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.							.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																								.	.	.	.	.	.						.
Query SS confidence																																																								.	.	.	.	.	.						.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	.	.	.	.	.	.	Q	T	L	V	D	.	A	I	P	M	V	L	G	Q	E	V	A	R	L	N
Query Conservation																																																								.	.	.	.	.	.						.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.						.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	T	A	V	E	P	F	I	L	H	L	P	L	T	.	.	.	.	.	.	.	.	.	.	.	H	W	G	V	V	G	A	K	I	T	T	S	D	G	I	E	G	Y	G	F	T	G	T	H	A	H	L	P	S	D	R	L	I	T	S	C	I	S	D	C	Y	A	P	L	L	L	G	E	D	A	S	D	H	S
Template Known Secondary structure		B															.	.	.	.	.	.	.	.	.	.	.												T	T	S																										T	T					T	T	S	B	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.												.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D
Query Conservation
Alig confidence																					.	.	.	.	.	.	.																															.																		.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.																															.																		.	.	.	.	.	.
Template Sequence		R	L	W	T	K	L	A	R	Y	P	S	L	Q	W	V	G	R	A	G	.	.	.	.	.	.	.	I	T	H	L	A	L	A	A	V	D	V	A	L	W	D	I	K	A	K	K	A	G	V	P	L	W	H	Y	L	G	.	G	A	R	T	A	G	V	E	A	Y	N	T	D	I	G	W	L	.	.	.	.	.	.
Template Known Secondary structure									T							T		S	S	S	.	.	.	.	.	.	.																						T	S	B					T	T	.			S		S								T	T			T	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.																															.																		.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.								.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.	P	D	A	R	I	T	V	D	P	N	G	A	W
Query Conservation																																																																				.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																													.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	T	L	E	D	L	L	A	G	S	A	R	A	V	E	E	D	.	G	F	T	R	L	K	I	K	V	G	H	D	D	P	N	I	D	I	A	R	L	T	A	V	R	E	R	V	D	S	A	V	R	I	A	I	D	G	N	G	K	W
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S															T	T	.												S	S															S		T	T								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
																					149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.
Predicted Secondary structure																	.																																																												.
Query SS confidence																	.																																																												.
Query Sequence		L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H	F	W	T
Query Conservation																	.																																																												.
Alig confidence																	.													.	.	.	.																																												.
Template Conservation																														.	.	.	.
Template Sequence		D	L	P	T	C	Q	R	F	C	A	A	A	K	D	L	D	I	Y	W	F	E	E	P	L	W	Y	D	D	.	.	.	.	V	T	S	H	A	R	L	A	R	N	T	S	I	P	I	A	L	G	E	Q	L	Y	T	V	D	A	F	R	S	F	I	D	A	G	A	V	A	Y	V	Q	P	D	V	T	R	L	G	G
Template Known Secondary structure													T	T	T	S							S		S		T	T		.	.	.	.												S	S						T	T			S										T	T			S						T	T	T	T	T
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D	A	P	G	L
Query Conservation
Alig confidence																												.	.	.	.																		.	.	.	.	.
Template Conservation																												.	.	.	.																		.	.	.	.	.
Template Sequence		I	T	E	Y	I	Q	V	A	D	L	A	L	A	H	R	L	P	V	V	P	H	A	G	E	M	S	.	.	.	.	Q	V	H	V	H	L	S	Y	W	H	P	A	S	T	I	L	E	.	.	.	.	.	Y	I	P	W	I	K	D	H	F	E	E	P	I	H	V	R	D	G	V	Y	K	R	P	E	Q	P	G	A
Template Known Secondary structure															T	T			B					T	T	T	T	.	.	.	.	T	T									T	T	B					.	.	.	.	.				S	S	G	G	G	B	S	S						T	T							S	S	B
Template Predicted Secondary structure																												.	.	.	.																		.	.	.	.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310					.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.						.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	E	L	D	W	E	Q	V	Q	K	A	H	E	A	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	T	T	P	L	A	E	S	F	T	R	Y	G	K	A	V	K
Template Known Secondary structure		S			B
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions