Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 64 Aligned Residues 341 % Identity 23% Template c3t9pB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme family protein from roseovarius Resolution 1.97 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	.	.	.	V	D	A	I	P	M	V	L	G	Q	E	V	A	R	L	N	K	V	V	Q
Query Conservation																																																											.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	A	R	L	E	T	F	C	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	V	G	F	V	R	V	T	T	D	S	G	A	Q	G	W	G	Q	V	S	T	Y	N	A	D	I	T	C	T	I	F	H	R	Q	I	A	P	H	A	L	G	T	D	A	L	D	F	A	D	T	L	D
Template Known Secondary structure		B										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S									T	T										S	S	S												T					T	T	S	B	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.																		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D	L	P	Y	V
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.																												.			.															.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.																												.			.															.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	Y	E	R	E	L	K	Y	P	G	S	Y	L	R	.	.	.	.	.	.	.	.	.	.	R	A	M	T	G	L	D	T	A	L	W	D	M	R	G	K	L	E	G	K	P	V	A	T	L	L	G	.	G	S	.	P	G	P	V	R	A	Y	A	S	S	M	R	R	D	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	T			S					.	.	.	.	.	.	.	.	.	.																			T		B					T	T	.			.	S												S	S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.																												.			.															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.											.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210								.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.																	.
Query SS confidence																																																.	.	.	.	.	.	.																	.
Query Sequence		E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	.	.	.	.	.	.	.	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.	P	D	A	R	I	T	V	D	P	N
Query Conservation																																																.	.	.	.	.	.	.																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.													.	.	.	.	.	.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	P	E	D	E	A	E	R	F	C	R	L	R	D	D	K	.	G	F	T	A	F	K	W	R	V	G	A	E	A	G	R	D	H	D	E	W	P	G	R	T	E	A	V	V	P	T	V	S	R	A	L	G	D	G	I	E	K	L	V	D	G	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																	.										S		T	T		T	T			S	S	T	T															T	T								T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
																		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.
Predicted Secondary structure																				.																																																												.
Query SS confidence																				.																																																												.
Query Sequence		G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H
Query Conservation																				.																																																												.
Alig confidence																				.													.	.	.	.																																												.
Template Conservation																																	.	.	.	.
Template Sequence		S	C	Y	S	P	A	R	A	I	E	V	G	K	L	L	Q	D	N	G	I	G	H	F	E	E	P	C	P	Y	W	E	.	.	.	.	Y	D	Q	T	A	A	V	R	A	A	L	L	L	D	V	A	G	G	E	Q	D	C	E	Y	S	S	W	Q	L	M	L	D	R	G	A	V	D	I	V	Q	P	D	V	M	Y
Template Known Secondary structure		T																	T	T								S		T	T		.	.	.	.												S	S						T	T			S										T	T			S
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.					.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.					.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																																											.	.	.	.
Query SS confidence																																																											.	.	.	.
Query Sequence		F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	.	.	.	.	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A
Query Conservation																																																											.	.	.	.
Alig confidence																												.																															.	.	.	.
Template Conservation																												.
Template Sequence		M	G	G	M	H	R	T	L	Q	V	C	Q	M	A	A	R	A	G	L	P	V	T	P	H	A	A	.	N	L	S	L	V	T	M	C	T	M	H	L	L	R	A	I	P	N	A	G	K	Y	L	E	F	S	I	E	G	P	E	Y	Y	P	W	Q	E	G	L	F	L	G	D	P	Y	R	I	E	G	G	Q	A	I
Template Known Secondary structure			T	S														T	T			B						.	S	S	S											T	T		T	T	B		S									T	T	T		G	G	G	T	T	S	B	S	S		T	T			B	T	T
Template Predicted Secondary structure																												.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	D	A	P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	D	A	P	G	W	G	V	E	I	S	P	T	W	L	D	S	A
Template Known Secondary structure				S		S	B	T	S			B								S
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions