Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 77 Aligned Residues 347 % Identity 21% Template c3n4fD_ PDB info PDB header:isomerase Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from geobacillus sp. y412mc10 Resolution 1.88 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		P	V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	.	.	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	V	D	A	I	P	M	V	L	G	Q	E	V	A	R	L	N	K	V	V	Q
Query Conservation																																	.	.
Alig confidence																																	.	.																							.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.
Template Sequence		W	K	V	E	K	I	E	F	A	K	L	T	G	E	R	A	R	S	A	G	A	N	G	R	I	G	V	H	G	K	S	C	T	V	D	I	A	R	I	T	I	D	G	Q	T	G	Y	G	S	S	I	H	X	T	P	.	.	.	.	.	.	E	W	A	E	D	V	I	G	R	R	L	L	D	L	F	D	D	R	G
Template Known Secondary structure			B																			B		S	S	S																	T	T									S				.	.	.	.	.	.					T	T	T	T		B	G	G	G	S	B		T	T	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.							.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.						.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	.	.	.	.	.	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T
Query Conservation																																																													.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.							.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Sequence		R	L	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	R	L	Q	L	E	Y	P	V	L	D	W	L	G	Q	R	Q	G	K	P	V	Y	D	L	V	S	.	G	A	H	L	E	T	G	A	S	L	V	V	P	C	Y	D	T	S	L	Y	F	D	D	L	H	L	A
Template Known Secondary structure			B		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T																	T		B					T		.		T	T	S		T	T														B			T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		86	.	.	.																						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.									210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.																.
Query SS confidence																																																				.	.	.	.	.	.	.	.																.
Query Sequence		D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	.	.	.	.	.	.	.	.	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	.	R	F	P	D	A	R
Query Conservation																																																				.	.	.	.	.	.	.	.																.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.	.	.	.	.	.	.	.																.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		D	E	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	A	L	X	Q	E	E	A	X	Q	G	Y	A	K	.	G	Q	R	H	F	K	I	K	V	G	R	G	G	R	H	X	P	L	W	E	G	T	K	R	D	I	A	I	V	R	G	I	S	E	V	A	G	P	A	G	K
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	.	T										T	T	T	T	T	S																						T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		144	.	.	.																				.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																										.																													.	.
Query SS confidence																										.																													.	.
Query Sequence		I	T	V	D	P	N	G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	.	.	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D
Query Conservation																										.																													.	.
Alig confidence																										.															.	.													.	.												.
Template Conservation																																									.	.																										.
Template Sequence		I	X	I	D	A	N	N	A	Y	N	L	N	L	T	K	E	V	L	A	A	L	S	D	V	N	L	Y	W	L	E	E	A	F	H	E	D	E	A	L	.	.	Y	E	D	L	K	E	W	L	G	Q	R	G	Q	N	V	L	I	A	D	G	E	G	L	A	S	.	P	H	L	I	E	W	A	T	R	G	R	V	D
Template Known Secondary structure							T	T														T	T	T	S								S	S	S						.	.												T										S	S			.	T	T							T	T	S
Template Predicted Secondary structure																																									.	.																										.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	L	A	D	P	H	F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G
Query Conservation
Alig confidence																																			.																																		.	.	.	.
Template Conservation																																			.																																		.	.	.	.
Template Sequence		V	L	Q	Y	D	I	I	W	P	G	F	T	H	W	X	E	L	G	E	K	L	D	A	H	G	L	R	S	A	P	H	C	Y	.	G	N	A	Y	G	I	Y	A	S	G	H	L	S	A	A	V	R	N	F	E	F	V	E	Y	D	D	I	T	I	E	G	X	D	.	.	.	.	V	S	G	Y	R	I	E	N	G
Template Known Secondary structure						B	T	T	T	B															T	T						B			.	S												T	T	T		T	T	B											T	T			.	.	.	.		T	T					T	T
Template Predicted Secondary structure																																			.																																		.	.	.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.					.	.	.	350	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	A	V	P	D	A	P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	H	V	P	A	T	P	G	F	G	I	V	F	D	D	E	L	V	T	Y	L
Template Known Secondary structure								S	S	B	T	S
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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