Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 38 Aligned Residues 345 % Identity 23% Template c3n4eA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, c-terminal PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from paracoccus denitrificans pd1222 Resolution 2.40 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.					.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																														.	.	.	.
Query SS confidence																																																														.	.	.	.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	V	D	A	.	.	.	.	I	P	M	V	L	G	Q	E	V	A	R	L	N	K	V	V
Query Conservation																																																														.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	A	K	V	E	A	L	S	V	A	X	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	S	A	F	V	R	I	T	A	E	D	G	T	V	G	W	G	E	A	S	P	X	L	G	G	I	A	S	L	G	V	V	A	R	D	I	A	P	F	L	E	G	Q	E	V	L	D	H	A	V	L	L
Template Known Secondary structure		B													.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	S										G	G	G	G										T	T					T	T	S	B	G	G	G
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.															.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D	L	P	Y
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.																													.																		.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.																													.																		.	.	.	.	.	.	.	.	.
Template Sequence		D	R	X	X	H	R	L	V	K	L	G	P	E	G	I	A	.	.	.	.	.	.	.	.	.	T	A	A	L	A	A	C	D	I	A	L	W	D	L	K	G	K	L	L	G	Q	P	I	Y	K	L	L	G	.	G	A	W	R	T	R	L	P	C	Y	S	S	I	G	G	N	A	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	G	G	G			T	T			.	.	.	.	.	.	.	.	.																				T	S	B					T	T	.			S		S												S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.																													.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.										.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.							210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.																		.
Query SS confidence																																																.	.	.	.	.	.																		.
Query Sequence		V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	.	.	.	.	.	.	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.	P	D	A	R	I	T	V	D	P	N
Query Conservation																																																.	.	.	.	.	.																		.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.	.	.	.	.	.																		.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	S	V	D	E	V	V	R	E	V	A	R	R	V	E	A	E	.	Q	P	A	A	V	K	I	R	W	D	G	D	R	T	R	C	D	V	D	I	P	G	D	I	A	K	A	R	A	V	R	E	L	L	G	P	D	A	V	I	G	F	D	A	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S																	.			S										T	T			S																			S	S								T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
																		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.
Predicted Secondary structure																				.																																																												.
Query SS confidence																				.																																																												.
Query Sequence		G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H
Query Conservation																				.																																																												.
Alig confidence																				.													.	.	.	.																																			.									.
Template Conservation																																	.	.	.	.																																			.
Template Sequence		N	G	Y	S	V	G	G	A	I	R	V	G	R	A	L	E	D	L	G	Y	S	W	F	E	E	P	V	Q	H	Y	H	.	.	.	.	V	G	A	X	G	E	V	A	Q	R	L	D	I	T	V	S	A	G	E	Q	T	Y	T	L	Q	A	L	K	D	L	I	L	S	G	.	V	R	X	V	Q	P	D	I	V	K
Template Known Secondary structure		T																	T	T		S						S		T	T		.	.	.	.												S	S				B		T	T			S											T	.								T	T	T
Template Predicted Secondary structure																																	.	.	.	.																																			.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230					.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D	A
Query Conservation
Alig confidence																										.																												.
Template Conservation																										.																												.
Template Sequence		X	G	G	I	T	G	X	X	Q	C	A	A	L	A	H	A	H	G	V	E	F	V	P	H	.	Q	T	Q	P	G	V	G	H	F	A	N	I	H	V	L	S	T	L	X	H	X	T	K	P	V	E	L	.	A	D	R	W	D	R	G	R	P	V	F	R	N	P	A	E	P	V	D	G	H	F	A	L	G	D	A
Template Known Secondary structure		T	T																T							.				S	S												T		T	T			S					.		T	T	G	G	G	G	T	T	T	B	S	S					B	T	T
Template Predicted Secondary structure																										.																												.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	L	G	I	V	V	D	E	D	E	L	A	S	R
Template Known Secondary structure		S	B	T				B
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions