Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 51 Aligned Residues 353 % Identity 24% Template c3mqtV_ PDB info PDB header:isomerase Chain: V: PDB Molecule: PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from shewanella pealeana Resolution 2.10 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.											.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	.	.	.	.	.	.	.	.	.	.	V	D	A	I	P	M	V	L	G	Q	E	V	A
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	V	S	V	E	F	I	P	V	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	E	N	T	V	I	V	K	V	T	D	E	N	G	V	Y	G	L	G	E	A	D	G	P	P	E	C	M	K	A	F	S	E	I	E	N	E	H	K	W	L	N	N	I	K	E	A	V	I	G	R	D	P	L
Template Known Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	S									S									T	T					B	T	T	B			G	G	G	G	T	T	T	S		T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.														.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.																													.
Template Conservation																								.	.	.	.	.	.	.	.	.																													.
Template Sequence		E	F	R	A	N	Y	N	R	M	Y	D	T	T	K	W	I	G	M	R	G	L	G	.	.	.	.	.	.	.	.	.	L	F	A	I	S	G	I	D	M	A	L	Y	D	L	A	G	K	Q	L	G	V	P	A	Y	K	L	M	G	.	G	A	Q	K	A	Q	L	T	P	Y	F	T	L	Y	P	S	V	A	A	D
Template Known Secondary structure														T	T	T	T		S	S	T			.	.	.	.	.	.	.	.	.																				T		B					T	T	.				S	S		B												T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																													.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.										.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.
Predicted Secondary structure																																																					.	.	.																			.
Query SS confidence																																																					.	.	.																			.
Query Sequence		K	T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	.	.	.	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.	P	D	A	R	I	T	V
Query Conservation																																																					.	.	.																			.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.											.	.	.																			.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		A	T	L	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	E	A	Y	K	P	L	I	A	K	A	K	E	R	.	G	A	K	A	V	K	V	C	I	I	P	N	D	K	V	S	D	K	E	I	V	A	Y	L	R	E	L	R	E	V	I	G	W	D	M	D	M	M	V
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	.	T		S										T	T	S																		S	S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		147	.	.	150	.																					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		234	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure									.															.
Query SS confidence									.															.
Query Sequence		D	P	N	G	A	W	L	.	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A
Query Conservation									.															.
Alig confidence									.															.													.	.	.	.
Template Conservation																																					.	.	.	.
Template Sequence		D	C	L	Y	R	W	T	D	W	Q	K	A	R	W	T	F	R	Q	L	E	D	I	D	L	Y	F	I	E	A	C	L	Q	H	D	D	.	.	.	.	L	I	G	H	Q	K	L	A	A	A	I	N	T	R	L	C	G	A	E	M	S	T	T	R	F	E	A	Q	E	W	L	E	K	T	G	I	S	V	V	Q	S
Template Known Secondary structure				T	T			S												G	G	G	G			S				S		S		T	T		.	.	.	.											S	S	S						T	T																	S
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		312	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.			.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure				.																																																												.	.
Query SS confidence				.																																																												.	.
Query Sequence		D	P	.	H	F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	.	.	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K
Query Conservation				.																																																												.	.
Alig confidence				.																												.																																.	.
Template Conservation																																.
Template Sequence		D	Y	N	R	C	G	G	V	T	E	L	L	R	I	M	D	I	C	E	H	H	N	A	Q	L	M	P	H	N	W	.	K	T	G	I	T	A	A	A	A	R	H	F	G	I	V	C	H	I	S	E	Y	V	E	Y	L	H	P	D	F	W	N	G	T	L	T	Q	Q	L	T	L	N	E	P	K	I	I	D	G	A
Template Known Secondary structure			T	T	T	S	S															T	T									.	S																T	T		S							G	G	G									S	B	S						B	T	T	B
Template Predicted Secondary structure																																.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	V	P	D	A	P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	V	S	D	K	P	G	L	G	I	E	L	N	I	E	F	V	E	Q	V
Template Known Secondary structure		B					S	S	B	T				B
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions