Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 28 Aligned Residues 354 % Identity 22% Template c3mkcA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:racemase; PDBTitle: crystal structure of a putative racemase Resolution 1.77 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.											.	.	.	70	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	P	V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	V	D	.	.	.	.	.	.	.	.	.	.	A	I	P	M	V	L	G	Q
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	A	P	I	K	S	I	E	F	I	P	V	N	Y	Q	S	Q	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	V	K	V	T	D	E	N	G	V	Y	G	L	G	E	A	D	G	S	P	D	A	I	L	A	Y	A	N	I	E	T	E	H	K	W	L	T	N	I	T	E	K	A	I	G	R
Template Known Secondary structure		T																				.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S									S										T					B	T	T	B			T	T	T	T	T	T	T	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.														.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	A	R	L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.																													.
Template Conservation																											.	.	.	.	.	.	.	.	.																													.
Template Sequence		L	P	I	E	I	N	A	I	W	D	A	X	Y	D	A	T	Q	W	Q	G	X	R	G	L	G	.	.	.	.	.	.	.	.	.	X	F	A	L	S	G	I	D	X	A	L	Y	D	L	A	G	K	Q	L	G	V	P	A	Y	Q	L	L	G	.	G	T	N	K	D	K	V	H	P	Y	L	T	L	Y	P	A	I
Template Known Secondary structure			T	T													T					S	S	T			.	.	.	.	.	.	.	.	.																				T		B					T	T	.			S		S											S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.																													.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.										.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230
Predicted Secondary structure																																																								.	.	.																			.
Query SS confidence																																																								.	.	.																			.
Query Sequence		D	R	T	K	T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	.	.	.	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.	P	D	A	R
Query Conservation																																																								.	.	.																			.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.											.	.	.																			.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		P	D	A	S	L	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	K	G	Y	A	P	L	L	E	K	A	K	A	H	.	N	I	R	A	V	K	V	C	V	P	I	K	A	D	W	S	T	K	E	V	A	Y	Y	L	R	E	L	R	G	I	L	G	H	D	T	D
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	.	T		S								T	T																					S	S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		149	150	.	.	.	.	.																						.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure												.															.
Query SS confidence												.															.
Query Sequence		I	T	V	D	P	N	G	A	W	L	.	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I
Query Conservation												.															.
Alig confidence												.															.													.	.	.	.
Template Conservation																																								.	.	.	.
Template Sequence		X	X	V	D	Y	L	Y	R	F	T	D	W	Y	E	V	A	R	L	L	N	S	I	E	D	L	E	L	Y	F	A	E	A	T	L	Q	H	D	D	.	.	.	.	L	S	G	H	A	K	L	V	E	N	T	R	S	R	I	C	G	A	E	X	S	T	T	R	F	E	A	E	E	W	I	T	K	G	K	V	H	L
Template Known Secondary structure							T	T															T	G	G	G			S				S		S		T	T		.	.	.	.												S	S		B				T	T													T	T			S
Template Predicted Secondary structure																																								.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		309	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.			.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure							.																																																											.	.
Query SS confidence							.																																																											.	.
Query Sequence		P	L	A	D	P	.	H	F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	.	.	E	G	D	C	R	L	T	Q	N	P	L	E	I	K
Query Conservation							.																																																											.	.
Alig confidence							.																												.																															.	.
Template Conservation																																			.
Template Sequence		L	Q	S	D	Y	N	R	C	G	G	L	T	E	L	R	R	I	T	E	X	A	T	A	N	N	V	Q	V	X	P	H	N	W	.	K	T	G	I	T	S	A	A	A	I	H	Y	Q	F	A	V	G	N	A	P	Y	F	E	Y	V	H	P	E	F	C	D	G	E	L	R	K	Y	L	V	T	P	E	A	E	L	V
Template Known Secondary structure						T	T	T	T	T															T	T									.	S															T			S	S							G	G	G									S								B
Template Predicted Secondary structure																																			.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	K	I	A	V	P	D	A	P	G	L	G	V	E	L	D	W	E	Q	V	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	G	G	F	A	K	P	T	A	P	G	L	G	I	D	L	N	Q	E	F	L	A	S
Template Known Secondary structure		T	T	B						S	S	B	T											T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions