Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 68 Aligned Residues 337 % Identity 19% Template c3ik4A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from herpetosiphon aurantiacus Resolution 2.10 Å

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		5	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.									60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure					.																																																					.	.	.	.	.	.	.	.
Query SS confidence					.																																																					.	.	.	.	.	.	.	.
Query Sequence		S	S	P	.	V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	.	.	.	.	.	.	.	.	I	Y	Q	T	L	V	D	A	I	P	M	V	L	G	Q	E
Query Conservation					.																																																					.	.	.	.	.	.	.	.
Alig confidence					.																							.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.
Template Sequence		S	L	P	T	T	I	Q	A	I	S	A	E	A	I	N	L	P	L	T	E	P	A	V	A	A	N	.	.	.	.	.	.	.	.	V	L	V	K	V	Q	L	A	D	G	T	L	G	L	G	E	A	A	P	F	P	A	V	S	G	E	T	Q	T	G	T	S	A	A	I	E	R	L	Q	S	H	L	L	G	A	D
Template Known Secondary structure				T	T	B													B	S								.	.	.	.	.	.	.	.								T	T	S												T	T	T															G	G	G	T	T	T		B
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.									.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	R	L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.					.									.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.					.									.	.	.	.	.
Template Sequence		V	R	G	W	R	K	L	A	A	M	L	D	H	A	E	H	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	A	A	R	C	G	L	E	M	A	M	L	D	A	L	T	R	H	Y	H	M	P	L	H	V	F	F	G	.	G	V	S	K	.	Q	L	E	T	D	M	T	I	.	.	.	.	.
Template Known Secondary structure		G	G	G													T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	T		B					T	T	.		S		S	.				B					.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.					.									.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.																.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.		130	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	K	T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	P	D	A	R	I	T	V	D	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	G	D	E	V	H	A	A	A	S	A	K	A	I	L	A	R	.	G	I	K	S	I	K	V	K	T	A	G	V	D	V	A	Y	D	L	A	R	L	R	A	I	H	Q	A	A	P	T	A	P	L	I	V	D	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S															T	.	T										S	S																S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
																										138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																			.	.			.
Query SS confidence																			.	.			.
Query Sequence		N	G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	.	.	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D
Query Conservation																			.	.			.
Alig confidence																			.	.			.													.	.	.	.
Template Conservation																																				.	.	.	.
Template Sequence		N	C	G	Y	D	V	E	R	A	L	A	F	C	A	A	C	K	A	E	S	I	P	M	V	L	F	E	Q	P	L	P	R	E	D	.	.	.	.	W	A	G	M	A	Q	V	T	A	Q	S	G	F	A	V	A	A	D	E	S	A	R	S	A	H	D	V	L	R	I	A	R	E	G	T	A	S	V	I	N	I	K
Template Known Secondary structure		T	T																	T	T										S		T	T		.	.	.	.											S	S	S					S	T	T		S	S											T			S
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.					.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P
Query Conservation
Alig confidence																																																				.									.
Template Conservation																																																				.									.
Template Sequence		L	M	K	A	G	V	A	E	G	L	K	M	I	A	I	A	Q	A	A	G	L	G	L	M	I	G	G	M	V	E	S	I	L	A	M	S	F	S	A	N	L	A	A	G	N	G	G	F	D	F	.	I	D	L	D	T	P	L	F	.	I	A	E	H	P	F	I	G	G	F	A	Q	T	G	G	T	L	Q	L	A
Template Known Secondary structure																					T								S	S																						.					G	G	G	G	.	B	S			S				S					T	T
Template Predicted Secondary structure																																																				.									.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		393	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	P	G	L	G	V	E	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	A	G	H	G	V	N	L	E
Template Known Secondary structure		S		S	B	T
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions