Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 17 Aligned Residues 376 % Identity 23% Template c3h12B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of putative mandelate racemase from bordetella2 bronchiseptica rb50 Resolution 1.50 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																.	.																														.	.	.	.
Query SS confidence																																.	.																														.	.	.	.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	.	.	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	V	D	.	.	.	.	A	I	P	M	V	L	G	Q	E	V	A	R	L	N	K
Query Conservation																																.	.																														.	.	.	.
Alig confidence																																.	.																														.	.	.	.
Template Conservation
Template Sequence		K	I	T	E	V	K	A	H	A	L	S	T	P	I	P	E	R	M	R	V	E	S	G	A	G	L	K	L	N	R	Q	M	I	L	V	E	V	R	T	D	E	G	V	T	G	V	G	S	P	S	G	P	Y	D	L	A	V	L	K	R	A	I	E	D	V	I	G	P	Q	L	I	G	E	D	P	A	N	I	N	Y
Template Known Secondary structure																	G	G	G					T	T			B													T	T	S									S	S	S												T	T					T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D	L
Query Conservation
Alig confidence																				.	.	.	.	.	.	.																																																		.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.																																																		.	.	.	.	.	.
Template Sequence		L	W	H	K	V	F	H	G	E	V	S	R	N	L	G	H	R	S	.	.	.	.	.	.	.	V	G	I	A	A	M	S	G	V	D	I	A	L	W	D	L	K	G	R	A	M	N	Q	P	I	Y	Q	L	L	G	G	K	F	H	T	R	G	V	R	A	Y	A	S	S	I	Y	W	D	L	.	.	.	.	.	.
Template Known Secondary structure										T							S	S	S	.	.	.	.	.	.	.																						T	S	B					T	T	S		S		S	S											S	S		.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.																																																		.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.								.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	P	.	D	A	R	I	T	V	D	P	N	G	A	W	L
Query Conservation																																																																				.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.																		.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	D	Q	A	A	D	E	L	A	G	W	V	E	Q	.	G	F	T	A	A	K	L	K	V	G	R	.	A	P	R	K	D	A	A	N	L	R	A	M	R	Q	R	V	G	A	D	V	E	I	L	V	D	A	N	Q	S	L	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	T		S							S	S	.																		S	S	S							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.
Template SS confidence
																							151	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.
Predicted Secondary structure																.																											.																																		.
Query SS confidence																.																											.																																		.
Query Sequence		L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	.	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H	F	W	T
Query Conservation																.																											.																																		.
Alig confidence																.													.	.	.	.											.																																		.
Template Conservation																													.	.	.	.
Template Sequence		R	H	D	A	L	A	M	L	R	I	L	D	E	A	G	C	Y	W	F	E	E	P	L	S	I	D	D	.	.	.	.	I	E	G	H	R	I	L	R	A	Q	G	T	P	V	R	I	A	T	G	E	N	L	Y	T	R	N	A	F	N	D	Y	I	R	N	D	A	I	D	V	L	Q	A	D	A	S	R	A	G	G
Template Known Secondary structure															T	T		S				S		S		T	T		.	.	.	.									T	T			S	S						T	T													T	T			S						T	T	T	S	S
Template Predicted Secondary structure																													.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.					.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D	A	P	G	L
Query Conservation
Alig confidence																							.																								.
Template Conservation																							.																								.
Template Sequence		I	T	E	A	L	A	I	S	A	S	A	A	S	A	H	L	A	W	N	P	H	.	T	F	N	D	I	I	T	V	A	A	N	L	H	L	V	A	A	S	P	H	P	A	M	.	F	E	W	D	I	T	H	N	D	L	M	T	R	L	A	S	Y	D	L	K	L	E	N	G	L	V	Q	P	P	Q	G	P	G	L
Template Known Secondary structure															T	T							.		T	T	S														S	S	S				.						S	S		G	G	G	T	T	S	B	S						B	T	T							S	S	B	T
Template Predicted Secondary structure																							.																								.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		398	.	400	.	.	.	.	.	.	.	.	.				410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		G	V	E	L	D	W	E	Q	V	Q	K	A	.	.	.	H	E	A	Y	K	R	L	P	G	G	A	R	N	D	A	G
Query Conservation														.	.	.
Alig confidence														.	.	.
Template Conservation
Template Sequence		G	F	E	I	D	W	D	F	V	A	A	H	A	W	K	G	E	P	A	I	G	A	G	H	G	M	K	K	E	G	H
Template Known Secondary structure		S	S		B								T	B			S			S	B										T
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.