Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 48 Aligned Residues 343 % Identity 20% Template c3dfhC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3 Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																														.	.	.	.
Query SS confidence																																																														.	.	.	.
Query Sequence		P	V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	V	D	.	.	.	.	A	I	P	M	V	L	G	Q	E	V	A	R	L	N	K	V
Query Conservation																																																														.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	I	I	S	D	I	H	C	I	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	D	R	H	N	L	I	T	V	V	V	E	T	N	E	G	V	T	G	F	G	C	A	T	F	Q	Q	R	P	L	A	V	K	T	M	V	D	E	Y	L	K	P	I	L	I	G	K	N	A	N	N	I	E	D	L
Template Known Secondary structure			B										.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	S										T	T											T	T												T						T	T		B	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.														.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D	L	P
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.																												.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.																												.														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	Q	M	M	M	V	N	A	Y	W	R	N	G	P	V	I	N	.	.	.	.	.	.	.	.	.	.	N	A	I	S	G	V	D	M	A	L	W	D	I	K	A	K	L	A	G	M	P	L	H	Q	L	F	G	.	G	K	S	R	D	A	I	P	V	Y	T	H	A	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	S	S			S					.	.	.	.	.	.	.	.	.	.																		T	T	S	B						T	.			S	S	S									.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																												.														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.											90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.																	.
Query SS confidence																																																		.	.	.																	.
Query Sequence		Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	.	.	.	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.	P	D	A	R	I	T	V	D	P	N	G	A
Query Conservation																																																		.	.	.																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.													.	.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	D	T	M	E	G	I	Y	D	L	V	E	G	F	L	E	K	.	G	Y	K	H	I	R	C	Q	L	G	F	D	Q	D	Q	Y	M	D	N	T	L	T	M	F	K	S	L	R	E	K	Y	G	N	Q	F	H	I	L	H	D	V	H	E	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S														T	.	T																															T	T	S	S							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
																			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.
Predicted Secondary structure																		.																																																												.
Query SS confidence																		.																																																												.
Query Sequence		W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H	F	W
Query Conservation																		.																																																												.
Alig confidence																		.													.	.	.	.																																												.
Template Conservation																															.	.	.	.
Template Sequence		L	F	P	N	Q	A	I	Q	F	A	K	E	V	E	Q	Y	K	P	Y	F	I	E	D	I	L	P	P	N	Q	.	.	.	.	T	E	W	L	D	N	I	R	S	Q	S	S	V	S	L	G	L	G	E	L	F	N	N	P	E	E	W	K	S	L	I	A	N	R	R	I	D	F	I	R	C	H	V	S	Q	I	G
Template Known Secondary structure		S													G	G	G			S						S		T	T		.	.	.	.	G	G	G						T	T									T	T			S										T	T			S						T	T	T	T	T
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	.	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D	A	P
Query Conservation																												.
Alig confidence																												.																																	.	.
Template Conservation																																																													.	.
Template Sequence		G	I	T	P	A	L	K	L	G	H	L	C	Q	N	F	G	V	R	I	A	W	H	C	P	P	D	M	T	P	I	G	A	A	V	N	T	H	L	N	V	H	L	H	N	A	A	I	Q	E	H	V	E	Y	N	G	N	T	H	K	.	.	V	F	P	N	A	A	E	P	I	N	G	Y	L	Y	A	S	E	I	A
Template Known Secondary structure		S															T									T	T																S	T	T	B															.	.		S	T	T					B	T	T							S	S
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	G	V	E	I	D	R	E	A	A	A	E	F
Template Known Secondary structure		B	S	S										T
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions