Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 72 Aligned Residues 349 % Identity 22% Template c3cyjA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme-2 like protein from rubrobacter xylanophilus Resolution 2.30 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		P	V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	V	D	.	A	I	P	M	V	L	G	Q	E	V	A	R	L	N	K	V	V	Q	Q
Query Conservation																																																														.
Alig confidence																																						.																								.
Template Conservation																																						.
Template Sequence		P	R	V	E	R	L	E	V	S	A	Y	T	V	P	T	D	Y	P	E	S	D	G	T	L	Q	W	D	S	T	T	M	I	L	V	E	A	.	H	G	G	G	R	K	G	L	G	Y	T	Y	G	D	V	S	V	G	R	F	V	E	S	K	L	A	G	V	A	E	G	S	D	A	L	S	P	P	A	V	W	A	R
Template Known Secondary structure			B																				T	T														.			T	T									S		T										T					T	T	S	B	T	T
Template Predicted Secondary structure																																						.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D	L	P	Y	V	E
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.																														.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.																														.	.																	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	Q	A	A	I	R	N	A	G	R	P	G	V	G	.	.	.	.	.	.	.	.	.	A	M	A	V	S	A	V	D	I	A	L	W	D	L	K	A	R	L	L	G	L	P	L	A	D	A	L	P	R	.	.	F	H	A	E	V	P	V	Y	G	S	G	G	F	T	S	Y	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	T	T		S	S	T			.	.	.	.	.	.	.	.	.																			T	T		B					S			.	.			S	S										T	T	S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																														.	.																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.										.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.	P	D	A	R	I	T	V	D	P	N	G	A	W	L	L	D	E	A
Query Conservation																																																															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	R	R	L	Q	E	Q	L	G	G	W	A	A	A	.	G	I	P	R	V	K	M	K	V	G	R	.	E	P	E	K	D	P	E	R	V	R	A	A	R	E	A	I	G	E	S	V	E	L	M	V	D	A	N	G	A	Y	T	R	K	Q	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	.	T										S	.	S	G	G	G														T	T	S							T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.
Template SS confidence
																			142	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		245	.	.	.	.	250	.		.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.
Predicted Secondary structure									.				.																											.	.																																		.
Query SS confidence									.				.																											.	.																																		.
Query Sequence		I	S	L	C	K	G	L	.	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	.	.	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H	F	W	T	L	S
Query Conservation									.				.																											.	.																																		.
Alig confidence									.				.													.	.	.	.											.	.																						.	.											.
Template Conservation																										.	.	.	.																																		.	.
Template Sequence		L	Y	W	A	G	A	F	A	R	E	A	G	I	S	Y	L	E	E	P	V	S	S	E	D	.	.	.	.	R	E	G	L	R	L	L	R	D	R	G	P	G	G	V	A	I	A	A	G	E	Y	E	W	T	L	P	Q	L	H	D	L	A	.	.	G	C	V	D	I	L	Q	A	D	V	T	R	C	G	G	I	T
Template Known Secondary structure																				S	S		T	T		.	.	.	.											S		T	T							T	T			S									.	.	T	T		S						T	T	T	T	T
Template Predicted Secondary structure																										.	.	.	.																																		.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.					.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	.	P	D	A	P	G	L	G
Query Conservation																																																																										.
Alig confidence																							.	.	.	.	.	.																	.																													.
Template Conservation																							.	.	.	.	.	.																	.
Template Sequence		G	L	L	R	V	D	G	I	C	R	G	H	Q	I	P	F	S	A	H	C	A	.	.	.	.	.	.	P	A	V	S	A	H	A	C	C	A	V	E	S	L	L	H	.	L	E	Y	F	H	D	H	A	R	V	E	R	L	L	F	D	G	T	L	D	P	E	G	G	S	L	R	P	D	P	D	R	P	G	L	G
Template Known Secondary structure				T	T									T							S		.	.	.	.	.	.								G	G	G		T	T				.																						G	G	G						T	T	S		B	T
Template Predicted Secondary structure																							.	.	.	.	.	.																	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.							.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	L	K	R	S	E	A	G	K	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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