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Job DescriptionQ46915
Confidence100.00%DateThu Jan 5 12:35:49 GMT 2012
Rank54Aligned Residues351
% Identity21%Templatec3cxoA_
PDB info PDB header:lyaseChain: A: PDB Molecule:putative galactonate dehydratase; PDBTitle: crystal structure of l-rhamnonate dehydratase from2 salmonella typhimurium complexed with mg and 3-deoxy-l-3 rhamnonate
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10......... 20.........30.. .......40.........50...
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Query Sequence  SSPVITDMKVIPVAG. . . . . . . HDSMLLNIGGAHN. . . . . . . . . . . . . . . . . . . . . . . . AYFTRNIVVLTDNAGHTGIGE
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Template Sequence  TLPKIKHVRAWFIGGATAEKGAGGGDYHDQGGNHWIDDHIATPMSKYRDYEQSRQSFGINVLGTLIVEVEAENRQTGFAV
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BSSTTS
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TT
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SS
GGGSS


TTTTSGGGSS
TGGGTTTSS
TTS
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   6...10.........20.........30.........40.........50.........60.........70.........80.....
 
   54.....60...... ...70.........80.........90.........100.........110.........120.........130..
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Query Sequence  APGGDVIYQTLVD. AIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALLDLLGKALNVPVC
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Template Sequence  STAGEMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLGATMYYSGSGGL. . . . . . . . VMNTISCVDLALWDLFGKVVGLPVY
Template Known Secondary structure 
TTTTSBTT
TTTSTTST........T
B
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   86...90.........100.........110.........120.........130.. .......140.........150.......
 
   133......140.........150.........160.........170.........180.........190.........200.........
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Query Sequence  ELLGPGKQREAITVLGYLFYIGDRTKTDLPYVENTPGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGV. . .
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Template Sequence  KLLG. GAVRDEIQFYATGA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RPDLAKEM. . . . . . . . GFIGGKMPTHWGPH
Template Known Secondary structure  TT.

SSSSS...............................
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S



GG
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   158.160. ........170..... ....180... ......190.......
 
   210.........220..... ....230.........240.........250.... .....260.........270.........280 ..
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Query Sequence  . . . LPGEQEIDTVRALKKR. FPDARITVDPNGAWLLDEAISLCKGLNDV. LTYAEDPCGAEQGFSGREVMAEFRRA. . TG
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Template Sequence  DGDAGIRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFNLKWIEECLPPQQ. . . . YEGYRELKRNAPAG
Template Known Secondary structure  G
SSS
TT


GGGT



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   198.200.........210.........220.........230.........240.........250......... 260.........270...
 
   283......290.........300.........310... ......320.........330.........340.........350.........360.
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Query Sequence  LPVATNMIATNWREMGHAVMLNAVDIPLADP. HFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGNP
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Template Sequence  MMVTSGEHHGTLQSFRTLAE. TGIDIMQPDVGWCGGLTTLVEIAALAKSRGQLVVPH. GSSVYSHHAVITFTNTPFSEFL
Template Known Secondary structure 

TT

ST.TT
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TTTTT
T



.S
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   274.....280.........290... ......300.........310.........320......... 330.........340.........350.
 
   362.......370.........380.........390 .........400.........
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Query Sequence  TAIDTHWIWQEGDCRLTQNPLEIKNGKIA. . VPDAPGLGVELDWEQVQKA
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Template Sequence  MTSPDCSTLRPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCHLKR
Template Known Secondary structure 

STTS
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TTTTTT



BTTGGGG
SSBTS

TTS

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   352.......360.........370.........380.........390.........400.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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