Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 58 Aligned Residues 345 % Identity 24% Template c3cb3B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of l-talarate dehydratase from polaromonas sp. js6662 complexed with mg and l-glucarate Resolution 2.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																													.	.	.	.
Query SS confidence																																																													.	.	.	.
Query Sequence		S	P	V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	.	.	.	.	V	D	A	I	P	M	V	L	G	Q	E	V	A	R	L	N	K
Query Conservation																																																													.	.	.	.
Alig confidence																									.	.	.	.	.	.																															.	.	.	.
Template Conservation																									.	.	.	.	.	.
Template Sequence		S	D	R	I	T	W	V	R	I	S	S	C	Y	L	P	L	A	T	P	I	M	T	E	.	.	.	.	.	.	I	A	I	L	F	A	E	I	E	T	A	G	G	H	Q	G	L	G	F	S	Y	S	K	R	A	G	G	P	G	Q	F	A	H	A	R	E	I	A	P	A	L	I	G	E	D	P	S	D	I	A	K
Template Known Secondary structure																		S	S						.	.	.	.	.	.											T	T	S										S	S	T	T												G	G	G	G	T	T	S		T	T
Template Predicted Secondary structure																									.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.							.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D	L
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.																													.			.															.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.																													.			.															.	.	.	.	.	.	.
Template Sequence		L	W	D	K	L	C	W	A	G	A	S	A	G	R	S	G	L	S	.	.	.	.	.	.	.	.	.	T	Q	A	I	G	A	F	D	V	A	L	W	D	L	K	A	K	R	A	G	L	S	L	A	K	L	L	G	.	S	Y	.	R	D	S	V	R	C	Y	N	T	S	G	G	F	L	.	.	.	.	.	.	.
Template Known Secondary structure										T	G	G	G		S	S	S			.	.	.	.	.	.	.	.	.																				T		B							.		S	.		S						B		T	T			T	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.																													.			.															.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.										.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.	P	D	A	R	I	T	V	D	P	N	G	A	W	L
Query Conservation																																																																			.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																													.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	T	P	I	D	Q	L	M	V	N	A	S	A	S	I	E	R	.	G	I	G	G	I	K	L	K	V	G	Q	P	D	G	A	L	D	I	A	R	V	T	A	V	R	K	H	L	G	D	A	V	P	L	M	V	D	A	N	Q	Q	W	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S															T	.	T											S																		T	T	S							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
																					158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.
Predicted Secondary structure																.																																																												.
Query SS confidence																.																																																												.
Query Sequence		L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H	F	W	T	L
Query Conservation																.																																																												.
Alig confidence																.													.	.	.	.																																												.
Template Conservation																													.	.	.	.
Template Sequence		R	P	T	A	Q	R	M	C	R	I	F	E	P	F	N	L	V	W	I	E	E	P	L	D	A	Y	D	.	.	.	.	H	E	G	H	A	A	L	A	L	Q	F	D	T	P	I	A	T	G	E	M	L	T	S	A	A	E	H	G	D	L	I	R	H	R	A	A	D	Y	L	M	P	D	A	P	R	V	G	G	I
Template Known Secondary structure													G	G	G			S						S		T	T		.	.	.	.												S	S						T	T			S											T			S										T	S
Template Predicted Secondary structure																													.	.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.					.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D	A	P	G	L	G
Query Conservation
Alig confidence																								.	.	.	.	.	.																			.	.	.	.	.
Template Conservation																								.	.	.	.	.	.																			.	.	.	.	.
Template Sequence		T	P	F	L	K	I	A	S	L	A	E	H	A	G	L	M	L	A	P	H	F	A	.	.	.	.	.	.	M	E	L	H	V	H	L	A	A	A	Y	P	R	E	P	W	V	E	.	.	.	.	.	H	F	E	W	L	E	P	L	F	N	E	R	I	E	I	R	D	G	R	M	L	V	P	T	R	P	G	L	G
Template Known Secondary structure														T	T							S		.	.	.	.	.	.										T	S	S	S						.	.	.	.	.				T	T	G	G	G	B	S							T	T							S	S	B	T
Template Predicted Secondary structure																								.	.	.	.	.	.																			.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.							.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.						.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		399	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	L	S	G	Q	V	K	A	W	T
Template Known Secondary structure				B		T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions