Job Description Q46915 Confidence 90.72% Date Thu Jan 5 12:35:49 GMT 2012 Rank 186 Aligned Residues 130 % Identity 12% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query Sequence		L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	P	D	.	.	.	A	R	I	T	V	D	P	N	G
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation
Template Sequence		I	A	L	Q	L	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E	G
Template Known Secondary structure									S															T	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S		B	T	T
Template Predicted Secondary structure
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260																.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																			.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																			.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	.	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A
Query Conservation																			.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																			.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.												.
Template Conservation																																															.	.	.	.
Template Sequence		K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	.	.	.	.	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H
Template Known Secondary structure																		T	T									S		B		T	T	S		T	T	G	G	G	T	S	S				.	.	.	.												T	T	S						S	S			S
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	L	N	A	V	D	I	P	L	A
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		L	K	.	.	R	V	D	G	V	X	L
Template Known Secondary structure			T	.	.	T	S	S
Template Predicted Secondary structure				.	.
Template SS confidence
		216	.			.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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