Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 63 Aligned Residues 345 % Identity 25% Template c2zc8B_ PDB info PDB header:metal binding protein Chain: B: PDB Molecule:n-acylamino acid racemase; PDBTitle: crystal structure of n-acylamino acid racemase from thermus2 thermophilus hb8 Resolution 1.95 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.											.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.										.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.										.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	.	.	.	.	.	.	.	.	.	.	D	V	I	Y	Q	T	L	V	D	.	A	I	P	M	V	L	G	Q	E	V
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.										.
Alig confidence																																					.															.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																					.
Template Sequence		R	I	E	A	A	E	L	R	I	L	E	L	P	L	K	F	R	F	E	T	S	F	G	V	Q	T	K	R	T	I	L	L	L	R	L	.	F	G	E	G	L	E	G	L	G	E	G	V	M	E	R	L	P	L	Y	R	E	E	T	V	A	G	A	R	Y	L	L	E	E	V	F	L	P	R	V	L	G	R	D	L
Template Known Secondary structure		B																				T	T														.			T	T										B	S	S		S	S	S	S		B											T						T	T		B
Template Predicted Secondary structure																																					.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.		.																.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.		.																.	.
Template Sequence		P	N	P	E	A	L	R	E	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	R	G	N	P	M	A	K	A	V	L	E	M	A	F	F	D	L	W	A	K	A	L	G	R	P	L	W	Q	V	L	G	.	G	.	V	R	Q	A	V	E	V	G	V	S	L	G	I	Q	P	.	.
Template Known Secondary structure			S									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S		S																					T	S	B						T	.		.			S				B								S	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.		.																.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.																	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	P	D	A	R	I	T	V	D	P	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	E	D	T	L	R	V	V	E	R	H	L	E	E	.	G	Y	R	R	I	K	L	K	I	K	P	.	.	.	G	W	D	Y	E	V	L	K	A	V	R	E	A	F	P	E	A	T	L	T	A	D	A	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S														T	.	T		S							B	T	.	.	.	T	B	S												T	T	S							T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.	.	.
Template SS confidence
																												141	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.
Predicted Secondary structure																				.																																																												.
Query SS confidence																				.																																																												.
Query Sequence		G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H
Query Conservation																				.																																																												.
Alig confidence													.							.													.	.	.	.																																												.
Template Conservation													.																				.	.	.	.
Template Sequence		S	A	Y	S	L	A	N	L	A	Q	L	.	K	R	L	D	E	L	R	L	D	Y	I	E	Q	P	L	A	Y	D	D	.	.	.	.	L	L	D	H	A	K	L	Q	R	E	L	S	T	P	I	C	L	D	E	S	L	T	G	A	E	K	A	R	K	A	I	E	L	G	A	G	R	V	F	N	V	K	P	A	R
Template Known Secondary structure		T				G	G	G					.			G	G	G	G	T		S						S		T	T		.	.	.	.	S											S	S					S	T	T			S											T			S
Template Predicted Secondary structure													.																				.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220					.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D	A
Query Conservation
Alig confidence																																																		.
Template Conservation																																																		.
Template Sequence		L	G	G	H	G	E	S	L	R	V	H	A	L	A	E	S	A	G	I	P	L	W	M	G	G	M	L	E	A	G	V	G	R	A	H	N	L	H	L	A	T	L	P	G	F	T	K	P	.	G	D	V	S	S	A	S	R	Y	W	E	E	D	I	V	E	E	A	L	E	A	K	D	G	L	M	P	V	P	E	G
Template Known Secondary structure			T	S														T	T																						T	T	S	T	T	B		S		.	B	S				G	G	G	T		S	S		S	B	S	S					B	T	T							S
Template Predicted Secondary structure																																																		.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	I	G	V	H	L	K	L	P	F	V	E	R	V
Template Known Secondary structure		S	B	T				B								T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions